Changelog for python3-rpy2-2.9.5-2.2.x86_64.rpm :
Mon Dec 3 13:00:00 2018 Todd R
- Update to 2.9.5

* Missing values in pandas :class:`Category` series were creating
invalid R factors when converted (issue #493).

Tue Aug 14 14:00:00 2018 schwabAATTsuse.de
- Remove unused dependencies on blas libraries
- Don\'t exclude post-build-checks

Wed Aug 8 14:00:00 2018 toddrme2178AATTgmail.com
- Update to 2.9.4

* Fallback for failure to import numpy or pandas is now dissociated from
failure to import :mod:`numpy2ri` or :mod:`pandas2ri` (issue #463).

* :func:`repr` for R POSIX date/time vectors is now showing a string
representation of the date/time rather than the timestamp as a float
(issue #467).

* The HTML representation of R data frame (the default representation in the
Jupyter notebook) was displaying an inconsistent number of rows
(found while workin on issue #466).

* Handle time zones in timezones in Pandas when converting to R data frames
(issue #454).

* When exiting the Python process, the R cleanup is now explicitly request
to happen before Python\'s exit. This is preventing possible segfaults
the process is terminating (issue #471).

* dplyr method `ungroup()` was missing from
:class:`rpy2.robjects.lib.dplyr.DataFrame` (issue #473).

Fri May 18 14:00:00 2018 jengelhAATTinai.de
- Ensure neutrality of description. Trim future goals from
description.

Fri May 11 14:00:00 2018 toddrme2178AATTgmail.com
- Fix license

Thu May 3 14:00:00 2018 toddrme2178AATTgmail.com
- Use %license tag

Thu May 3 14:00:00 2018 toddrme2178AATTgmail.com
- Update to version 2.9.3

* Delegate finding where is local time zone file to either a user-specified
module-level variable `default_timezone` or to the third-party
module :mod:`tzlocal` (issue #448).
- Update to version 2.9.2
+ Changes

* The pandas converter is converting :class:`pandas.Series` of `dtype` `\"O\"`
to :class:`rpy2.robjects.vectors.StrVector` objects, issueing a warning
about it (See issue #421).

* The conversion of pandas data frame is now working with columns rather
than rows (introduce in bug fix for issue #442 below) and this is expected
to result in more efficient conversions.
+ Bugs fixed

* Allow floats in figure sizes for R magic (Pull request #63)

* Fixed pickling unpickling of robjects-level instances,
regression introduced in fix for issue #432 with release 2.9.1 (issue #443).

* Fixed broken unit test for columns of `dtype` `\"O\"` in `pandas` data frames.

* Fixed incorrect conversion of R factors in data frames to columns of
integers in pandas data frame (issue #442).
- Update to version 2.9.1
+ Changes

* Fixing issue #432 (see Section Bugs fixed below) involved removed the method
`__reduce__` previously provided for all rpy2 objects representing R objects.
+ Bugs fixed

* An error when installing with an unsupported R version was fixed (issue #420).

* The docstring for `rinterface.endr()` was improperly stating that the function was not taking
any argument (issue #423).

* Target version of dplyr and tidyr are now 0.7.4 and 0.7.2 respectively.

* Fixed memory leak when pickling objects (issue #432). Fixing the leak caused a
slight change in the API (see Section Changes above).

* Conversion to :mod:`pandas` now handling R ordered factor (issue #398).
:mod:`jinja2` was not listed as a dependency (issue #437).

Wed Aug 23 14:00:00 2017 toddrme2178AATTgmail.com
- Implement single-spec version
- Update to version 2.9.0

* See changes at https://bitbucket.org/rpy2/rpy2/src/33ae1887a9cf3b624ea03b389835cd7a91cb815a/NEWS?at=RELEASE_2_9_0&fileviewer=file-view-default

Mon May 9 14:00:00 2016 toddrme2178AATTgmail.com
- Update to version 2.7.9

* Python objects exposed to R could lead to segfault when the Python process is
exiting (issue #331)
- specfile:

* updated source url to files.pythonhosted.org
- update to version 2.7.8:

* New class :class:`rpy2.robjects.SourceCode`. The class extends
Python\'s :class:`str` and is meant to represent R source code. An
HTML renderer for the ipython notebook (syntax highlighting using
:mod:`pygment` is also added).

* New module :mod:`rpy2.robjects.lib.tidyr` providing a custom
wrapper for the R library `tidyr`

* The long-deprecated functions
:func:`rpy2.rinterface.set_writeconsole` and
:func:`rpy2.rinterface.get_writeconsole` are no longer
available. One of :func:`rpy2.rinterface.set_writeconsole_regular`
/ :func:`rpy2.rinterface.set_writeconsole_warnerror` or
:func:`rpy2.rinterface.get_writeconsole_regular` /
:func:`rpy2.rinterface.get_writeconsole_warnerror` respectively
should be used instead.

* The attribute :attr:`rpy2.robjects.RObject.slots` can now be
implictly interated on (the method :meth:`__iter__` is now an
alias for :meth:`keys`).
- specfile:

* update copyright year
- update to version 2.7.7:

* Pickling `robjects`-level objects resulted in `rinterface`-level
objects when unpickled (issue #324).
- changes from version 2.7.6:

* :mod:`rpy2.robjects.lib.ggplot2` was modified to match the newly
released ggplot2-2.0.0. This is introducing API-breaking changes,
which breaks the promise to keep the API stable through bugfix
releases within series, but without it 2.7.x will not a work with
new default installation of the R package ggplot2.
- changes from version 2.7.5:

* Division and floordivision through the delegator `.ro` provided
with R vectors wrapped by `robjects`. (issue #320)

* Memory leak when unserializing (unpickling) R objects bundled in
Python objects (issue #321)
- update to version 2.7.4:

* Python 3.5 highlighted slightly incorrect C-level flags in rpy2
objects declarations, and :mod:`rpy2.robjects` could not be
imported.

* Fixed unit tests for rmagic when :mod:`numpy` is not installed,
and for :mod:`numpy` is installed by :mod:`pandas` in missing.
- update to version 2.7.3:

* method :meth:`DataFrame.collect` in :mod:`rpy2.robjects.lib.dplyr`
was not functioning.

* Applied patch by Matthias Klose to fix implict pointer
conversions.

* :mod:`pandas2ri.ri2py_dataframe` is now propagating the row names
in the R data frame into an index in the pandas data frame (issue
[#285])

* methods `union`, `intersect`, `setdiff`, `ungroup` defined in the
R package `dplyr` were missing from the `DataFrame` definition in
:mod:`rpy2.robjects.lib.dplyr`
- update to version 2.7.2:

* methods `distinct`, `sample_n`, and `sample_frac` defined in the R
package `rplyr` were missing from the `DataFrame` definition in
:mod:`rpy2.robjects.lib.dplyr`

* The fix for the inheritance problem with
:mod:`rpy2.robjects.lib.dplyr.DataFrame` introduced a regression
whenever `group_by` is used.

* The methods to perform joins on dplyr `DataFrame` objects where
not working properly.
- update to version 2.7.1:

* The :meth:`__repr__` for :mod:`robjects`-level vectors was broken
for vectors of length 1 (issue #306)

* The ipython notebook-based sections of the documentation
were not building

* Classes inheriting from :mod:`dplyr.DataFrame` had dplyr methods
returning objects of their parent class.
- specfile:

* check for R-version >= 3.2
- update to version 2.7.0:

* New exception :class:`rpy2.rinterface.RParsingError`. Errors
occurring when parsing R code through
:func:`rpy2.rinterface.parse` raise this exception (previously
:class:`rpy2.rinterface.RRuntimeError`).

* New class :class:`rpy2.robjects.conversion.Converter` to replace
the `namedtuple` of the same name

* New class :class:`rpy2.robjects.converter.ConversionContext`. This
is a context manager allowing an easy setting of local conversion
rules. The constructor has an alias called
:meth:`rpy2.robjects.constructor.localconverter`.

* New module :mod:`rpy2.robjects.lib.dplyr` providing a custom
wrapper for the R library `dplyr`

* Method :method:`Environment.items()` to iterate through the
symbols and associated objects in an R environment.

* Exception :class:`rpy2.rinterface.ParsingIncompleError`, a child
class of :class:`rpy2.rinterface.ParsingError`, raised when
calling :meth:`rpy2.rinteface.parse` results in R\'s C-level status
to be `PARSE_INCOMPLETE`. This can make the Python implementation
of an IDE for R easier.

* Attribute :attr:`slots` for :mod:`rpy2.robjects`-level
objects. The attribute is a :class:`rpy2.robjects.Rslots` which
behaves like a Python mapping to provide access to R-attributes
for the object (see issue #275).

* The R \"magic\" for ipython `%%R` can be passed a local converter
(see new features above) by using `-c`.

* Conversion rules were not applied when parsing and evaluating
string as R with :class:`rpy2.robjects.R`.

* Calling the constructor for
:class:`rpy2.robjects.vectors.FactorVector` with an R factor is no
longer making a copy, loosing the associated R attributes if any
(fixes issue #299).

* `rpy2` could crash when R was unable to dynamically load the C
extension for one of its packages (noticed with issue #303).

* :func:`rpy2.rinterface.is_initialized` is now a function.

* :meth:`rpy2.robjects.R.__call__` is now calling R\'s
`base::parse()` to parse the string rather the parser through R\'s
C-API. The workaround let\'s us retrieve R\'s error message in case
of failure (see issue #300)
- changes from version 2.6.3:

* Metaclass `RS4Auto_Type` facilitating the creation of Python
classes from R S4 classes was not handling classes without methods
(issue #301)
- update to version 2.6.2:

* Check that R >= 3.2 is used at build time (issue #291)

* Conversion rules were not applied when parsing and evaluating
string as R code with :class:`rpy2.robjects.R`.
- update to version 2.6.1:

* Because of their long names, the classes
:class:`SignatureTranslatedAnonymousPackage`,
:class:`SignatureTranslatedPackage`, and
:class:`SignatureTranslatedFunction` in
:mod:`rpy2.robjects.packages` have now the aliases :class:`STAP`,
:class:`STP`, and :class:`STF` respectively.

* Typo in function name emitting warnings at build time (issue #283)

* The conversion of `TaggedList` instances is now handling the names
of items in the list (issue #286)

* Loading the `ipython` extension in the absence of `pandas` or
`numpy` is now issuing a warning (issue #279)
- update to version 2.6.0:

* Report the existence during build time of a file `.Renviron`, or
the definition of the environment variables `R_ENVIRON\' or
`R_ENVIRON_USER` with a warning. (issue #204)

* Moved console writting callback to use `ptr_R_WriteConsoleEx`
rather than `ptr_R_WriteConsole`. This allows callbacks for
warnings and messages. `get/set_writeconsole` is now replaced by
`get/set_writeconsole_regular` (regular output) and
`get/set_writeconsole_warnerror` (warning and error). In order to
conserve backward compatibility an alias for
`get/set_writeconsole_regular` called `get/set_writeconsole` is
provided.

* Added callback for `ptr_R_ResetConsole`.

* `pandas` :class:`Categorical` objects are automatically handled in
the pandas converter.

* The translation of R symbols into Python symbols used in `importr`
and underlying classes and methods can be customized with a
callback. The default translation turning `.` into `_` is
`default_symbol_r2python`.

* Translation of named arguments in R function is now sharing code
with the translation of R symbols (see point above), providing a
consistent way to perform translations.

* Utility function `sequence_to_vector` in `robjects` to convert
Python sequences (e.g., `list` or `tuple`) to R vector without
having to specify the type (the type is inferred from the list).

* `robjects.vectors` object have a property :attr:`NAvalue`
that contains the `NA` value for the vector, allowing generic code
on R vectors. For example, testing whether any vector contains
`NA` can be written as `any(x is myvector.NAvalue for x in
myvector)`. Making numpy /masked/ array is an other application.

* Changes
+ The automatic name translation from R to Python used in
`importr` is now slightly more complex. It will not only
translate `.` to `_` but should a conflict arise from the
existence in R of both the `.` and `_` versions the `.` version
will be appended a `_` (in accordance with :pep:0008). The
change was discussed in issue #274).
+ The ipython \'R magic\' is now starting with a default conversion
mode that is `pandas2ri` if it can find it, then `numpy2ri` if
it can find it, and then the basic conversion.
+ R vectors are now typed at the C level (IntSexpVector,
FloatSexpVector, ListSexpVector, etc...) whenever retrieving
them from the embedded R with the low-level `rinterface`. This
is facilitating dispatch on vector type (e.g., with
`singledispatch` now used for the conversion system).

* Bugs fixed
+ The evaluation of R code through R\'s C-level function `tryEval`
caused console output whenever an error occurred. Moving to the
seemingly experimental `tryEvalSilent` makes evaluations less
verbose.
+ Multiple plots in one ipython cell (pull request #44)
- changes from version 2.5.7:

* \"simplegeneric\" was moved of ipython 4.0.0 (pull request #43)

Sun May 24 14:00:00 2015 toddrme2178AATTgmail.com
- Update to version 2.5.6
- Detection of the R version during setup on Win8 (issues #255 and #258)
- Segmentation fault when converting :mod:`pandas` :class:`Series` with
elements of type object (issue #264)
- The default converter from Python (non-rpy2) objects to rinterface-level
objects was producing robjects-level objects whenever the input was of
type :class:`list` (discovered while fixing issue #264)
- Implemented suggested fix for issue with unlinking files on Windows
(issue #191)
- Testing rpy2 in the absence of ipython no longer stops with an error
(issue #266)
- Update to version 2.5.5
- Crash (segfault) when querying an R object in an R environment triggers an
error (symbol exists, but associated values resolves to an error - issue #251)
- Change in the signature of `rcall` was not updated in the documentation
(issue #259)
- Minor update to the documentation (issue #257)

Tue Jan 13 13:00:00 2015 toddrme2178AATTgmail.com
- specfile:

* update copyright year

* README -> README.md
- update to version 2.5.4:

* Filter PNG files on size, preventing empty files causing trouble
to be ipython notebook rendering of graphics later on (slight
modification of the pull request #39)

* Fix installation left unresolved with rpy2-2.5.3 (issue #248)

* Possible segfault with Python 3.4 (issue #249)
- changes to version 2.5.3:

* \'setup.py\' has \'install_requires\' in addition to \'requires\' in the
hope to fix the missing dependency with Python 2
(\'singledispatch\' is required but not installed).

* Extracting configuration information from should now work when R
is emitting a warning (issue #247)

* On OS X the library discovery step can yield nothing (see issue
[#246]). A tentative fix is to issue a warning and keep moving.
- changes to version 2.5.2:

* String representation of \'robjects.R\' (issue #238)

* Check during \'build_ext\' if unsupported version of R (pull request
[#32])

* HTMl display of columns of factors in a DataFrame (issue #236)

* HTML display of factors (issue #242)
- changes to version 2.5.1:

* Require singledispatch if Python 3.3 (issue #232)

* Fixed bug when R spits out a warning when asked configuration
information (issue #233)

* Restored printing of compilation information when running
\'setup.py\'

* Fixed installation issue on some systems (issue #234)

* Workaround obscure failure message from unittest if Python < 3.4
and \'singledispatch\' cannot be imported (issue #235)
- changes to version 2.5.0:

* Experimental alternative way to preserve R objects from garbage
collection. This can be activated with
\'rinterface.initr(r_preservehash=True)\' (default is \'False\'.

* \'GGPlot\' object getting a method \'save\' mirroring R\'s
\'ggplot2::ggsave()\'.

* The conversion system is now using generics/single dispatch.

* New module \'rpy2.ipython.html\' with HTML display for rpy2 objects

* [Experimental] New function \'robjects.methods.rs4instance_factory\'
to type RS4 objects with more specificity.

* The script \'setup.py\' was rewritten for clarity and ease of
maintenance. Now it only uses \'setuptools\'.
- changes to version 2.4.4:

* Use \'input\' rather than \'raw_input\' in the default console
callback with Python 3 (fixes issue #222)

* Issues with conversions, pandas, and rmagic (fixes issue #218 and
more)
- changes to version 2.4.3:

* \'geom_raster\' was missing from \'rpy2.robjects.lib.ggplot2\' (pull
request #30)

* Fixed issue with SVG rendering in ipython notebook (issue #217)

* Regression with \'rx2()\' introduced with new conversion (issue
[#219])

* Fixed documentation (missing \'import\') (issue #213)
- Release 2.4.2

* Bugs fixed
- Assigning an R `DataFrame` into an environment was failing if
the conversion for Pandas was activated. (Issue #207)
- Release 2.4.1

* Bugs fixed
- :meth:`rpy2.ipython` fixed spurious output to notebook cells.
- Release 2.4.0

* Changes
- Conversion system slightly changed, with the optional
conversions for :mod:`numpy` and :mod:`pandas` modified
accordingly. The changes should only matter if using
third-party conversion functions.
- The Python 3 version is now a first class citizen. `2to3`
is no longer used, and the code base is made directly
compatible with Python. This lowers significantly the
installation time with Python 3
(which matters when developping rpy2).
- The default options to initialize R (`rpy2.rinterface.initoptions\') are no longer
`(\'rpy2\', \'--quiet\', \'--vanilla\', \'--no-save\')` but now
`(\'rpy2\', \'--quiet\', \'--no-save\')`.
- :class:`robjects.vectors.ListVector` can be instanciated from
any objects with a method `items()` with the expectation that the method
returns an iterable of (name, value) tuples, or even be an iterable
of (name, value) tuples.

* New features
- For instances of :class:`rpy2.robjects.Function`,
the `__doc__` is now a property fetching information
about the parameters in the R signature.
- Convenience function :func:`rpy2.robjects.packages.data`
to extract the datasets in an R pacakges
- :mod:`ipython`\'s `rmagic` is now part of :mod:`rpy`. To use, `%load_ext
rpy2.ipython` from within IPython.
- new method :meth:`rpy2.rinterface.SexpEnvironment.keys`, returnings
the names in the environment as a tuple of Python strings.
- convenience class :class:`robjects.packages.InstalledPackages`, with a companion function
:func:`robjects.packages.isinstalled`.
- new class :class:`rinterface.SexpSymbol` to represent R symbols

* Bugs fixed
- :meth:`rpy2.rinterface.Sexp.do_slot` was crashing when
the parameter was an empty string (PR #155)
- Release 2.3.10

* Bugs fixed
- `setup.py build` was broken when new R compiled with OpenMP (Issue #183)
- Release 2.3.9

* Bugs fixed
- Changes in pandas 0.13.0 broke the rpy2 conversion layer (Issue #173)

Sun Nov 24 13:00:00 2013 p.drouandAATTgmail.com
- Update to version 2.3.8
+ Fix crash with R-3.0.2. Changes in R-3.0.2\'s C API coupled to a
strange behaviour with R promises caused the problem. (PR #150)
- Changes from version 2.3.7
+ ggplot2\'s \"guides\" were missing
+ ggplot2\'s \"theme_classic\" was missing (PR #143)
+ ggplot2\'s \"element_rect\" was missing (PR #144)
+ :func:`rpy2.interactive.packages` was broken (PR #142)
- Changes from version 2.3.6
+ Several reports of segfault on OS X (since rpy2-2.3.1 - PR #109)
+ More fixes in converting `DataFrames` with dates from `pandas`
- Remove redundant %clean section
- Fix license; rpy2 is released under the MOZILLA PUBLIC LICENSE 1.1
and can be used under this one or under GNU General Public License
version 2 or GNU Lesser General Public License version 2.1
- Add licenses files in package documentation

Mon Apr 22 14:00:00 2013 toddrme2178AATTgmail.com
- update to new version 2.3.5
- update to new URL
- add buildrequires: R-base, which is needed for openSUSE:Factory

Fri May 18 14:00:00 2012 toddrme2178AATTgmail.com
- Add python 3 package
- Clean up spec file formatting

Sat Apr 14 14:00:00 2012 badshah400AATTgmail.com
- Update BuildRequires in keeping with lapack package naming
changes.

Sat Feb 25 13:00:00 2012 scorotAATTfree.fr
- fix build for SLE-11

Fri Jan 6 13:00:00 2012 toddrme2178AATTgmail.com
- Clean up spec file

Fri Dec 16 13:00:00 2011 otto.dassauAATTgmx.de
- update to version 2.2.4
- add readline as BuildRequires

Mon May 2 14:00:00 2011 dassauAATTgbd-consult.de
- update new version 2.1.9

Thu Nov 4 13:00:00 2010 dassauAATTgbd-consult.de
- update new version 2.1.7

Mon Jul 20 14:00:00 2009 dassauAATTgbd-consult.de
- added to opensuse Build Service

Mon Jun 15 14:00:00 2009 tpgAATTmandriva.org
- update new version