Changelog for
perl-BioPerl-1.007002-2.1.noarch.rpm :
* Thu Sep 27 2018 chrisAATTcomputersalat.de- fix for boo#1089992
* nothing provides /usr/local/bin/perl- fix license- fix wrong end of line encoding (dos)
* Wed Feb 07 2018 cooloAATTsuse.com- updated to 1.007002 see /usr/share/doc/packages/perl-BioPerl/Changes
* Thu Jul 26 2012 chrisAATTcomputersalat.de- update to 1.6.901 - [Notes]
* Use of AcePerl is deprecated; Ace.pm isn\'t actively maintained, and modules using Ace will also be deprecated [lds, cjfields]
* Minor bug fix release
* Bio::SeqIO::gbxml tests require XML::SAX [hartzell]
* Address Build.PL issues when DBI is not present [hartzell]
* Skip gbxml.t and Interpro tests when modules not installed [cjfields]
* Remove deprecated code for perl 5.14.0 compat [cjfields]
* Due to schema changes and lack of support for older versions, support for NeXML 0.9 is only (very) partially implemented. See: https://redmine.open-bio.org/issues/3207 - [Bug fixes]
* [3205] - small fix to Bio::Perl blast_sequence() to make compliant with docs [genehack, cjfields]
* $VERSION for CPAN/cpanm-based installs was broken; force setting of module version from dist_version (probably not the best way to do this, but it seems to work) [rbuels, cjfields]- update to 1.6.900 April 14, 2011 - [Notes]
* This will probably be the last release to add significant features to core modules; subsequent releases will be for bug fixes alone. We are planning on a restructuring of core for summer 2011, potentially as part of the Google Summer of Code. This may become BioPerl 2.0.
* Version bump represents \'just prior to v 1.7\'. We may have point releases to deal with bugs, with increments of 1.6.901, 1.6.902, etc. This code essentially is what is on the github master branch. - [New features]
* Core code updated for perl 5.12.x [cjfields, Charle Tilford]
* Bio::Tree refactor - major overhaul of Bio::Tree code by Greg Jordan, fixes several bugs - removal of Scalar::Util::weaken code, which was causing odd headaches with premature GC, memory leaks with perl 5.10.0, etc [cjfields]
* Bio::DB::SeqFeature bug fixes for GBrowse2 compatibility [lds, scottcain, many others]
* Bio::SeqIO::msout, Bio::SeqIO::mbsout - parsers for ms and mbs [Warren Kretzschmar]
* Bio::SeqIO::gbxml - bug 2515 - new contribution [Ryan Golhar, jhannah]
* Bio::Assembly::IO - support for reading Maq, Sam and Bowtie files [maj] - support for reading 454 GS Assembler (Newbler) ACE files [fangly] - bug 2483: support for writing ACE files [Joshua Udall, fangly] - bug 2599: support DBLINK annotation in GenBank files [cjfields] - bug 2726: reading/writing granularity: whole scaffold or one contig at a time [Joshua Udall, fangly]
* Bio::OntologyIO - Added parsing of xrefs to OBO files, which are stored as secondary dbxrefs of the cvterm [Naama Menda] - General Interpro-related code refactors [dukeleto, rbuels, cjfields]
* PAML code updated to work with PAML 4.4d [DaveMessina] - [Bug fixes]
* [3198] - sort tabular BLAST hits by score [DaveMessina]
* a lot of BUG fixes, please see Changes file for more info- remove obsolete Build patch- remove Authors from description- add deps patch and send upstream
* Wed Dec 01 2010 cooloAATTnovell.com- switch to perl_requires macro
* Mon Aug 16 2010 chrisAATTcomputersalat.de- enabled some more optional tests o Algorithm::Munkres, Convert::Binary::C, GraphViz, PostScript::TextBlock, Spreadsheet::ParseExcel
* Wed Aug 04 2010 chrisAATTcomputersalat.de- add Build patch o do not try to connect CPAN ;)- added recommended pkgs o + BuildRequires (recommended) --with test
* Mon Aug 02 2010 chrisAATTcomputersalat.de- initial package 1.6.1
* created by cpanspec 1.78
