Changelog for python311-tables-3.10.1-lp155.50.3.x86_64.rpm :

* Sun Aug 25 2024 Ben Greiner - Update to 3.10.1 [#]# Bugfixes
* Fix version constraints for the numpy runtime requirements
* (#1204).
* For a mistake it didn\'t allow to use PyTables with numpy 2.x.
* Fix compatibility with PyPy (:issue:1205), Thanks to Michał Górny. [#]# Improvements
* Upstream: Enforce numpy >= 2 as build constraint (see discussion in #1200). -- not enforced in openSUSE
* Use tuple of plain ints for chunk info coordinates. Thanks to Ivan Vilata-i-Balaguer.
* Enable faulthandler in tables.tests.test_all. Thanks to Eric Larson.- Release 3.10.0
* New direct chunking API which allows access to raw chunk data skipping the HDF5 filter pipeline (cutting overhead, see \"Optimization tips\" in User\'s Guide), as well as querying chunk information (#1187). Thanks to Ivan Vilata and Francesc Alted. This development was funded by a NumFOCUS grant. [#]# Improvements
* This release is finally compatible with NumPy 2 with wheels being built against it so that they are still binary-compatible with NumPy 1 installations (#1176, #1183, #1184, #1192, #1195, [#1160], #1172, #1185). NumPy >= 1.20 is required now. Thanks to Antonio Valentino, Maximilian Linhoff and Eric Larson.
* Fix compatibility with Python 3.13 (#1166), Python >= 3.10 required. Cython 3.0.10 is required for building. Thanks to Antonio Valentino.
* Add type hints to atom.py (#1079). This also narrows some types, only allowing bytes to be stored in VLStringAtom and only str in VLUnicodeAtom. Thanks to Nils Carlson.
* Add type hints to (hopefully) the complete PyTables API (#1119, [#1120], #1121, #1123, #1124, #1125, #1125, #1126, #1128, #1129, [#1130], #1131, #1132, #1133, #1135, #1136, #1137, #1138, #1139, [#1140], #1141, #1142, #1143, #1145, #1146, #1147, #1148, #1150, [#1151], #1152). Thanks to Ko Stehner.
* Reduce impact of CPU information gathering by caching in local file (#1091, #1118, #1081). Thanks to Antti Mäkinen and Maximilian Linhoff. [#]# Bugfixes
* Fix typos and may other language errors in docstrings (#1122). Thanks to Ko Stehner.
* Fix Blosc2 filter not setting dparams.schunk on decompression (#1110 and #1109). Thanks to Tom Birch.
* Fix using B2ND optimizations when Blosc2 is not the only enabled filter; move Fletcher32 compression to end of pipeline when enabled (#1191 and #1162). Thanks to Ivan Vilata and Alex Laslavic.
* Fix broken internal passing of createparents argument in Leaf.copy (#1127 and #1125). Thanks to Ko Stehner.
* Re-enable relative paths in ExternalLink class (#1095). Thanks to erikdl-zeiss.
* Fix using prefix in heavy tests methods of test_queries (#1169). Thanks to Miro Hrončok.
* Fix TypeError when computing Blosc2 search paths with missing library (#1188 and #1100). Thanks to martinowitsch, Padraic Calpin and Eric Larson.
* Avoid overflow RuntimeWarning on NumPy expectedrows value (#1010). Thanks to wony-zheng and Ivan Vilata. [#]# Other changes
* Assorted fixes to b2nd benchmark, with new results. Thanks to Ivan Vilata.
* Point users to example code to handle \"Selection lists cannot have repeated values\" exception (#1161 and #1149). Thanks to Joshua Albert.
* Remove unused getLibrary C code. Thanks to Antonio Valentino.
* Fri Apr 19 2024 Ben Greiner - Pin to numpy < 2: gh#PyTables/PyTables#1083- Clean obsolete python39
* Fri Feb 23 2024 Dominique Leuenberger - Use newly supported shrink{} on OBS to exclude python flavors will all python versions skipped.
* Tue Feb 20 2024 Ben Greiner - Reenable test flavor for Python 3.9 instead of actually testing it with every other test flavor. Will now automatically be excluded when globally dropped and can be removed at a later time.- Enable sle15_python_module_pythons for the sake of multiflavor simplicity (still unresolvable for now)
* Tue Feb 06 2024 Dirk Müller - disable testing for 3.9, add 3.12 testing
* Fri Dec 01 2023 Steve Kowalik - Update to 3.9.2:
* Minimum supported version for Python is 3.9 (see gh-1062).
* New features + Apply optimized slice read to Blosc2-compressed CArray and EArray + Add basic API for column-level attributes as Col._v_col_attrs
* Bugfixes + Fix the assembly of returned slice data in Blosc2 NDim optimized slice reads by using Blosc2’s b2nd_copy_buffer + Fix crash in Blosc2 optimized path with large tables + Fix compatibility with NumExpr v2.8.5 + Fix ptrepack failures with external links + Replace stderr messages with Python warnings + Fix Cython slice indexing under Python 3.12 + Fix unsafe temporary file creation in benchmark
* Improvements + PyTables wheels now use a threadsafe build of the HDF5 library + Partial support for the future NumPy 2, with some tests still failing + Relax the reading of Blosc2 NDim to cope with datasets stored with other tools + Use H5Dchunk_iter (when available) to speed up walking over many chunks in a very large table, as well as with random reads + Improve setup.py (now using pyproject.toml as per PEP 518) and blosc2 discovery mechanism + Enable compatibility with Cython 3 + Handle py-cpuinfo missing in some platforms + Avoid NumPy >= 1.25 deprecations, use numpy.all, numpy.any, etc. instead.
* Other changes + Drop compatibility with the obsolete HDF5 1.8 API + Require python-blosc2 >= 2.3.0 or c-blosc2 >= 2.11.0 + Assorted fixes to b2nd slicing optimization tips + New benchmark for ERA5 climate data + New “100 trillion baby” benchmark + New benchmark for querying meteorologic data- Unpin Cython, Cython 3 is now supported- Drop patches tables-pr1000-debundled-blosc2.patch and numpy-1.25.patch:
* Both included upstream
* Mon Aug 21 2023 Steve Kowalik - Pin Cython to < 3.
* Fri Aug 18 2023 Daniel Garcia - Add numpy-1.25.patch upstream patch gh#PyTables/PyTablesAATT337792561e59
* Tue Apr 11 2023 Dominique Leuenberger - Remove test-py38 flavor from multibuild: python 3.8 is no longer supported.
* Sat Feb 25 2023 Ben Greiner - Promote tables-debundled-blosc2.patch to tables-pr1000-debundled-blosc2.patch
* Do not require python-blosc2 for anything
* gh#PyTables/PyTables#1000- Remove pre-compiled libblosc2.so gh#PyTables/PyTables#1001- Split out test into multibuilds: Even the \"light\" test suite takes more than 1 hour for all 4 python flavors executed sequentially
* Fri Feb 17 2023 Ben Greiner - Use python-blosc2 and c-blosc2- Drop environement vars which would have only been used with embedded c-blosc- Disable building docs (sphinx update broke it)- Add tables-debundled-blosc2.patch gh#PyTables/PyTables#1000
* Wed Feb 08 2023 Arun Persaud - specfile:
* update copyright year
* require python >= 3.8- update to version 3.8.0:
* Improvements + Support for Python 3.11 has been added (PR #962). + Support for Python 3.6 and Python 3.7 has been dropped (PR [#966]). + Added a new (registered) HDF5 filter for Blosc2 compressor (PR [#969]). + Added optimized paths for Blosc2 reading and writing in tables. This bypasses the HDF5 filter pipeline by building the Blosc2 CFrames and sending them to the HDF5 direct chunking machinery (PR #969). + Internal C-Blosc sources updated to 1.21.2. + Thanks to Oscar Guiñon, Francesc Alted for implementing Blosc2 the support and NumFOCUS for providing a grant for that.
* Other changes + Starting form this release, C source files generated by Cython are no longer included in the source distribution package. + Pre-built HTML documentation is no longer included in the source package.
* Tue Mar 29 2022 Ben Greiner - Avoid HDF5 library version mismatches -- see boo#1196682
* Sun Jan 16 2022 Ben Greiner - Update to 3.7.0
* Compatibility with Python 3.10, numpy 1.21 and HDF5 1.12.
* Support for Python 3.5 has been dropped (#840 and #850).
* Internal C-Blosc sources updated to 1.21.1 (#931). Note that, starting from C-Blosc 1.19 does not include the Snappy codec sources anymore, so Snappy will be not available if you compile from included sources; other packages (like conda or wheels), may (or may not) include it.
* Switch to git submodule for the management of vendored c-blosc sources.
* Improved code formatting and notation consistency (#873, #868, [#865] thanks to Miroslav Šedivý).
* Improve the use of modern Python including :mod:pathlib, f-strings (#859, #855, #839 and #818 thanks to Miroslav Šedivý).
* Simplified management of version information.
* Drop dependency on the deprecated distutils.
* Modernize the setup script and add support for PEP517 (#907).
* Fix pkg-config (setup.py) for Python 3.9 on Debian. Thanks to Marco Sulla PR #792.
* Fix ROFileNode fails to return the fileno() (#633).
* Do not flush read only files (#915 thanks to AATTlrepiton).
* Drop the deprecated hdf5Version and File.open_count.
* the :func:get_tables_version and :func:get_hdf5_version functions are now deprecated please use the coresponding :data:tables.__version__ and :data:tables.hdf5_version instead.- Drop patches fixed upstream
* PyTables-compat-numpy119.patch
* PyTables-pr810-tostring.patch
* PyTables-skip-test_vlarray.patch
* tables-pr862-lowercasefdtype.patch- Replace Never-use-the-msse2-flag-explicitly.patch by use of environment variable
* Wed Feb 17 2021 Ben Greiner - Skip python36 build: python36-numpy was dropped in Tumbleweed due to NEP 29- Add tables-pr862-lowercasefdtype.patch to support NumPy 1.20 gh#PyTables/PyTables#862
* Thu Dec 24 2020 Benjamin Greiner - remove mock requirement- add PyTables-compat-numpy119.patch for compatibility with numpy 1.19- add PyTables-pr810-tostring.patch in order to avoid numerous deprecation warnings -- gh#PyTables/PyTables#810- add PyTables-skip-test_vlarray.patch in order to skip failing tests -- gh#PyTables/PyTables#845
* Tue May 19 2020 Petr Gajdos - %python3_only -> %python_alternative
* Sat Nov 09 2019 Arun Persaud - specfile:
* make it python3 only
* remove six
* update required version for numpy and numexpr- update to version 3.6.1:
* Maintenance release to fix packaging issues. No new features or bugfixes.- changes from version 3.6.0:
* PyTables 3.6 no longer supports Python 2.7 see PR #747.
* Improvements + Full python 3.8 support. + On Windows PyTables wheels on PyPI are linked to `pytables_hdf5.dll` instead of `hdf5.dll` to prevent collisions with other packages/wheels that also vendor `hdf5.dll`. This should prevent problems that arise when a different version of a dll is imported that the version to which the program was linked to. This problem is known as \"DLL Hell\". With the renaming of the HDF5 DLL to `pytables_hdf5.dll` these problems should be solved.
* Bugfixes + Bugfix for HDF5 files/types with padding. For details see :issue:`734`. + More fixes for python 3.8 compatibility: Replace deprecated time.clock with time.perf_counter Thanks to Sergio Pascual (sergiopasra). see :issue:`744` and PR #745. + Improvements in tests as well as clean up from dropping Python 2.7 support. Thanks to Seth Troisi (sethtroisi).
* Mon Jul 22 2019 Todd R - Update to 3.5.2
* Fixed compatibility with python 3.8: Fixed `Dictonary keys changed during iteration` RuntimeError while moving/renameing a node. Thanks to Christoph Gohlke for reporting and Miro Hroncok for help with building PyTables for python 3.8alpha (cython compatibility).
* Fixed a bug in offset calculations producing floats instead of ints affecting python 3. See PR #736. Thanks to Brad Montgomery.- Update to 3.5.1
* Maintenance release to fix how PyPi repo is handling wheel versions.- Update to 3.5.0
* When copying data from native HDF5 files with padding in compound types, the padding is not removed now by default. This allows for better compatibility with existing HDF5 applications that expect the padding to stay there. Also, when the `description` is a NumPy struct array with padding, this is honored now. The previous behaviour (i.e. getting rid of paddings) can be replicated by passing the new `allow_padding` parameter when opening a file. For some examples, see the new `examples/tables-with-padding.py` and `examples/attrs-with-padding.py`. For details on the implementation
* Added a new flag `--dont-allow-padding` in `ptrepack` utility so as to replicate the previous behaviour of removing padding during file copies. The default is to honor the original padding in copies.
* Improve compatibility with numpy 1.16.
* Improve detection of the LZO2 library at build time.
* Suppress several warnings.
* Add AVX2 support for Windows.- Rebase Never-use-the-msse2-flag-explicitly.patch- Remove upstream-included patches:
* pytables_no_unsafe_write.patch
* pytables_fix_exception_check.patch
* Wed Feb 13 2019 Todd R - Add patches for numpy 1.16 compatibility:
* pytables_fix_exception_check.patch from: https://github.com/PyTables/PyTables/commit/46fa2f07c00613ed6b647b2cf44e388f547fe668
* pytables_no_unsafe_write.patch from: https://github.com/PyTables/PyTables/commit/f6b64c942fb91e6c261fa455969a38482c22beeb
* Fri Aug 10 2018 tchvatalAATTsuse.com- Drop python-unittest2 dependency it was needed only on py2.6
* Wed Jun 13 2018 toddrme2178AATTgmail.com- Update to 3.4.4 + Improvements
* Environment variable to control the use of embedded libraries.
* Include citation in repository. + Bugs fixed
* Fixed import error with numexpr 2.6.5.dev0
* Fixed linter warnings.
* Fixed for re.split() is version detection.
* Fixed test failures with Python 2.7 and NumPy 1.14.3- Remove upstream-included initRecArray_tuples.patch
* Thu May 03 2018 toddrme2178AATTgmail.com- Add initRecArray_tuples.patch Upstream bug report: https://github.com/PyTables/PyTables/issues/688 From: https://github.com/PyTables/PyTables/pull/689 Should be in next release
* Wed May 02 2018 tchvatalAATTsuse.com- Version update to 3.4.3:
* On interactive python sessions, group/attribute __dir__() method autocompletes children that are named as valid python identifiers.
* Implement Group.__getitem__() to have groups act as python-containers, so code like this works: hfile.root[\'some child\'].
* Enable building with Intel compiler (icc/icpc).
* PEP 519 support, using new os.fspath method.
* Optional disable recording of ctime (metadata creation time) when creating datasets that makes possible to get bitwise identical output from repeated runs.
* Prevent from reading all rows for each coord in a VLArray when indexing using a list .
* Fixed division by zero when using _convert_time64() with an empty nparr array.
* Fixed deprecation warnings with numpy 1.14.
* Skip DLL check when running from a frozen app.
* Fixed behaviour with slices out of range.- Drop merged patch fix_numpy_recarray.patch- Add patch Never-use-the-msse2-flag-explicitly.patch to avoid using msse2 and avx on buildbots that support it, as we can be on non avx machines...
* Mon Feb 26 2018 toddrme2178AATTgmail.com- Add fix_numpy_recarray.patch Fixes issues with recarrays under numpy 1.14. Patch accepted upstream. Should be in next release. From: https://github.com/PyTables/PyTables/pull/664
* Tue Apr 25 2017 toddrme2178AATTgmail.com- Update to version 3.4.2 + Improvements
* setup.py detects conda env and uses installed conda (hdf5, bzip2, lzo and/or blosc) packages when building from source. + Bugs fixed
* Linux wheels now built against built-in blosc.
* Fixed windows absolute paths in ptrepack, ptdump, ptree. :issue:`616`. Thanks to oscar6echo.- Update to version 3.4.1 + Bugs fixed
* Fixed bug in ptrepack- Switch to hdf5 1.10 series.- Implement single-spec version.
* Thu Aug 25 2016 toddrme2178AATTgmail.com- hdf5_18 has been renamed to hdf5-1_8.
* Tue Aug 16 2016 toddrme2178AATTgmail.com- update to version 3.2.3.1:
* Fixed issues with pip install.- update to version 3.2.3:
* Improvements + It is now possible to use HDF5 with the new shared library naming scheme (>= 1.8.10, hdf5.dll instead of hdf5dll.dll) on Windows (gh-540). Thanks to Tadeu Manoel. + Now :program: ptdump sorts output by node name and does not print a backtrace if file cannot be opened. Thanks to Zbigniew Jędrzejewski-Szmek.
* Bugs fixed + Only run tables.tests.test_basics.UnicodeFilename if the filesystem encoding is utf-8. Closes gh-485. + Add lib64 to posix search path. (closes gh-507) Thanks to Mehdi Sadeghi. + Ensure cache entries are removed if fewer than 10 (closes gh-529). Thanks to Graham Jones. + Fix segmentation fault in a number of test cases that use index.Index (closes gh-532 and gh-533). Thanks to Diane Trout. + Fixed the evaluation of transcendental functions when numexpr is compiled with VML support (closes gh-534, PR #536). Thanks to Tom Kooij. + Make sure that index classes use buffersizes that are a multiple of chunkshape[0] (closes gh-538, PR #538). Thanks to Tom Kooij. + Ensure benchmark paths exist before benchmarks are executed (PR [#544]). Thanks to rohitjamuar.
* Other changes + Minimum Cython version is now v0.21- specfile:
* add python-py-cpuinfo to build requirements
* depend on hdf5_18-devel, since pytables is not compatible with hdf5 >= 1.10
* Mon Aug 15 2016 toddrme2178AATTgmail.com- Fix update-alternatives implementation.
* Mon Feb 01 2016 toddrme2178AATTgmail.com- update to version 3.2.2:
* Fix AssertionError in Row.__init_loop. See gh-477.
* Fix issues with Cython 0.23. See gh-481.
* Only run tables.tests.test_basics.UnicodeFilename if the filesystem encoding is utf-8. Closes gh-485.
* Fix missing missing PyErr_Clear. See gh-#486.
* Fix the C type of some numpy attributes. See gh-494.
* Cast selection indices to integer. See gh-496.
* Fix indexesextension._keysort_string. Closes gh-497 and gh-498.- changes from version 3.2.1.1:
* Fix permission on distributed source distribution- update to version 3.2.1:
* Fix indexesextension._keysort. Fixes gh-455. Thanks to Andrew Lin.- Implement update-alternatives
* Thu May 14 2015 benoit.moninAATTgmx.fr- update to version 3.2.0: Improvements
* The nrowsinbuf is better computed now for EArray/CArray having a small chunkshape in the main dimension. Fixes #285.
* PyTables should be installable very friendly via pip, including NumPy being installed automatically in the unlikely case it is not yet installed in the system. Thanks to Andrea Bedini.
* setup.py has been largely simplified and now it requires setuptools. Although we think this is a good step, please keep us informed this is breaking some installation in a very bad manner.
* setup.py now is able to used pkg-config, if available, to locate required libraries (hdf5, bzip2, etc.). The use of pkg-config can be controlled via setup.py command line flags or via environment variables. Please refer to the installation guide (in the User Manual) for details. Closes gh-442.
* It is now possible to create a new node whose parent is a softlink to another group (see gh-422). Thanks to Alistair Muldal.
* link.SoftLink objects no longer need to be explicitly dereferenced. Methods and attributes of the linked object are now automatically accessed when the user acts on a soft-link (see gh-399). Thanks to Alistair Muldal.
* Now ptrepack recognizes hardlinks and replicates them in the output (repacked) file. This saves disk space and makes repacked files more conformal to the original one. Closes gh-380.
* New pttree script for printing HDF5 file contents as a pretty ASCII tree (closes gh-400). Thanks to Alistair Muldal.
* The internal Blosc library has been downgraded to version 1.4.4. This is in order to still allow using multiple threads inside Blosc, even on multithreaded applications (see gh-411, gh-412, gh-437 and gh-448).
* The print_versions() function now also reports the version of compression libraries used by Blosc.
* Now the setup.py tries to use the ‘-march=native’ C flag by default. In falls back on ‘-msse2’ if ‘-march=native’ is not supported by the compiler. Closes gh-379.
* Fixed a spurious unicode comparison warning (closes gh-372 and gh-373).
* Improved handling of empty string attributes. In previous versions of PyTables empty string were stored as scalar HDF5 attributes having size 1 and value ‘0’ (an empty null terminated string). Now empty string are stored as HDF5 attributes having zero size
* Added a new cookbook recipe and a couple of examples for simple threading with PyTables.
* The redundant utilsextension.get_indices() function has been eliminated (replaced by slice.indices()). Closes gh-195.
* Allow negative indices in point selection (closes gh-360)
* Index wasn’t being used if it claimed there were no results. Closes gh-351 (see also gh-353)
* Atoms and Col types are no longer generated dynamically so now it is easier for IDEs and static analysis tool to handle them (closes gh-345)
* The keysort functions in idx-opt.c have been cythonised using fused types. The perfomance is mostly unchanged, but the code is much more simpler now. Thanks to Andrea Bedini.
* Small unit tests re-factoring Bugs fixed
* Fixed compatibility problems with numpy 1.9 and 1.10-dev (closes gh-362 and gh-366)
* Fixed compatibility with Cython >= 0.20 (closes gh-386 and gh-387)
* Fixed support for unicode node names in LRU cache (only Python 2 was affected). Closes gh-367 and gh-369.
* Fixed support for unicode node titles (only Python 2 was affected). Closes gh-370 and gh-374.
* Fixed a bug that caused the silent truncation of unicode attributes containing the ‘0’ character. Closes gh-371.
* Fixed descr_from_dtype() to work as expected with complex types. Closes gh-381.
* Fixed the tests.test_basics.ThreadingTestCase test case. Closes gh-359.
* Fix incomplete results when performing the same query twice and exhausting the second iterator before the first. The first one writes incomplete results to seqcache (gh-353)
* Fix false results potentially going to seqcache if tableextension.Row.update() is used during iteration (see gh-353)
* Fix Column.create_csindex() when there’s NaNs
* Fixed handling of unicode file names on windows (closes gh-389)
* No longer not modify sys.argv at import time (closes gh-405)
* Fixed a performance issue on NFS (closes gh-402)
* Fixed a nasty problem affecting results of indexed queries. Closes gh-319 and probably gh-419 too.
* Fixed another problem affecting results of indexed queries too. Closes gh-441.
* Replaced “len(xrange(start, stop, step))” -> “len(xrange(0, stop - start, step))” to fix issues with large row counts with Python 2.x. Fixes #447. Other changes
* Cython is not a hard dependency anymore (although developers will need it so as to generated the C extension code).
* The number of threads used by default for numexpr and Blosc operation that was set to the number of available cores have been reduced to 2. This is a much more reasonable setting for not creating too much overhead.- add python-setuptools as a new build dependency- pass -q to %setup to avoid spamming the build log- rename README.txt to README.rst: changed upstream- add new binary pttree to the package