Changelog for bowtie-debuginfo-1.3.1-bp155.1.9.x86_64.rpm :

* Wed May 18 2022 Dominique Leuenberger - Update to version 1.3.1: + Fixed an overflow issue in `bowtie-build` that would sometimes yield corrupt \"large\" (64-bit) indexes; the resulting index would sometimes cause `bowtie` to hang. Note: `bowtie2-build` does not have this issue. + Fixed an issue in `bowtie` causing XM:i SAM optional field to sometimes be off by 1 when using the `-m/-M` flags. + Fixed an issue that would sometimes cause deadlocks in `bowtie` when running multithreaded. + Fixed an issue causing build errors when compiling against a pre-C++11 standard.
* Thu Apr 22 2021 Ferdinand Thiessen - Fixed SPEC file: Replaced broken URL
* Mon Sep 14 2020 Christophe Giboudeaux - Update to 1.3.0:
* Fixed an issue causing bowtie to report incorrect results when using a Bowtie 2 index.
* New, more efficient implementation of --reorder for keeping SAM output lines in same order as input reads
* Added -x parameter for specifying index. bowtie still supports specifying an index via positional parameter, but this behavior will be deprecated.
* Migrated python scripts to python3.
* Fully removed colorspace functionality.
* Added support for compiling on ARM architectures.
* Fixed an issue preventing bowtie from outputting newlines in --max and --un output files.
* Fixed an issue causing alignment results to vary based on read names.
* Fixed an issue preventing --no-unal from suppressing unmapped reads.
* Removed dependence on some third-party libraries, simplifying the code and improving portability.
* Fix an issue preventing bowtie from running with many threads on big-endian machines.- Spec cleanup- Enable aarch64 and disable ppc
* and s390x.
* Tue May 12 2020 Guillaume GARDET - aarch64 is not yet supported on Bowtie1. See: https://github.com/BenLangmead/bowtie/pull/13
* Thu Nov 07 2019 Atri Bhattacharya - Update to version 1.2.3:
* Added support for reading and inspecting Bowtie 2 indexes. Bowtie 2 indexes can now be used with either Bowtie or Bowtie 2.
* Added support for building an index from a gzipped-compressed FASTA.
* Fixed issue preventing bowtie from reporting repeated alignments when -M is specified.
* Fixed issue with -F mode omitting final base of each read.
* Fixed clipping of first letter of first read in batches after first.
* Fixed an issue preventing bowtie wrapper script from finding indexes.- New BuildRequires: tbb-devel.- Fix env based hashbangs.- Use %%license to install LICENSE.- Only build on 64-bit, building on 32-bit is no longer supported.
* Thu May 05 2016 flyosAATTmailoo.org- Initial release