Content of RPM TfReg-7.1-1.7.1.x86_64.rpm :
/usr/bin/tfreg
/usr/bin/tfreg-salt-regression.pl
/usr/share/TfReg
/usr/share/TfReg/data
/usr/share/TfReg/data/bustos22-Mg-0.5.dat
/usr/share/TfReg/data/bustos22-Mg-1.5.dat
/usr/share/TfReg/data/bustos22-Mg-10.dat
/usr/share/TfReg/data/bustos22-Mg-125.dat
/usr/share/TfReg/data/bustos22-Mg-20.dat
/usr/share/TfReg/data/bustos22-Mg-3.dat
/usr/share/TfReg/data/bustos22-Mg-50.dat
/usr/share/TfReg/data/chen12_t2t5_adj_200.dat
/usr/share/TfReg/data/deoxyinosine_pb.par
/usr/share/TfReg/data/deoxyinosine_pb_ia.reg
/usr/share/TfReg/data/deoxyinosine_pb_ic.reg
/usr/share/TfReg/data/deoxyinosine_pb_ig.reg
/usr/share/TfReg/data/deoxyinosine_pb_ii.reg
/usr/share/TfReg/data/deoxyinosine_pb_it.reg
/usr/share/TfReg/data/dna_jb_1020.par
/usr/share/TfReg/data/dna_jb_119.par
/usr/share/TfReg/data/dna_jb_220.par
/usr/share/TfReg/data/dna_jb_621.par
/usr/share/TfReg/data/dna_jb_69.par
/usr/share/TfReg/data/dna_mm_60_tm.dat
/usr/share/TfReg/data/dna_mm_cd_pb_60.par
/usr/share/TfReg/data/dna_mm_cd_pb_60.reg
/usr/share/TfReg/data/dna_mm_ci_pb_60.par
/usr/share/TfReg/data/dna_mm_ci_pb_60.reg
/usr/share/TfReg/data/dna_pb_1020.par
/usr/share/TfReg/data/dna_pb_119.par
/usr/share/TfReg/data/dna_pb_220.par
/usr/share/TfReg/data/dna_pb_60.par
/usr/share/TfReg/data/dna_pb_60.reg
/usr/share/TfReg/data/dna_pb_621.par
/usr/share/TfReg/data/dna_pb_69.par
/usr/share/TfReg/data/dna_pb_cc_ag.par
/usr/share/TfReg/data/dna_pb_cc_ctrl.par
/usr/share/TfReg/data/dna_pb_cy3.par
/usr/share/TfReg/data/dna_pb_cy3.reg
/usr/share/TfReg/data/dna_pb_cy5.par
/usr/share/TfReg/data/dna_pb_cy5.reg
/usr/share/TfReg/data/dna_pb_mg_0.5.par
/usr/share/TfReg/data/dna_pb_mg_0.5.reg
/usr/share/TfReg/data/dna_pb_mg_1.5.par
/usr/share/TfReg/data/dna_pb_mg_1.5.reg
/usr/share/TfReg/data/dna_pb_mg_10.par
/usr/share/TfReg/data/dna_pb_mg_10.reg
/usr/share/TfReg/data/dna_pb_mg_125.par
/usr/share/TfReg/data/dna_pb_mg_125.reg
/usr/share/TfReg/data/dna_pb_mg_20.par
/usr/share/TfReg/data/dna_pb_mg_20.reg
/usr/share/TfReg/data/dna_pb_mg_3.par
/usr/share/TfReg/data/dna_pb_mg_3.reg
/usr/share/TfReg/data/dna_pb_mg_50.par
/usr/share/TfReg/data/dna_pb_mg_50.reg
/usr/share/TfReg/data/dna_pb_mgk_0.5.par
/usr/share/TfReg/data/dna_pb_mgk_0.5.reg
/usr/share/TfReg/data/dna_pb_mgk_1.5.par
/usr/share/TfReg/data/dna_pb_mgk_1.5.reg
/usr/share/TfReg/data/dna_pb_mgk_10.par
/usr/share/TfReg/data/dna_pb_mgk_10.reg
/usr/share/TfReg/data/dna_pb_mgk_20.par
/usr/share/TfReg/data/dna_pb_mgk_20.reg
/usr/share/TfReg/data/dna_pb_mgk_3.par
/usr/share/TfReg/data/dna_pb_mgk_3.reg
/usr/share/TfReg/data/dna_pb_tt_ctrl.par
/usr/share/TfReg/data/dna_pb_tt_hg.par
/usr/share/TfReg/data/dna_tpb_1020.par
/usr/share/TfReg/data/dna_tpb_119.par
/usr/share/TfReg/data/dna_tpb_220.par
/usr/share/TfReg/data/dna_tpb_621.par
/usr/share/TfReg/data/dna_tpb_69.par
/usr/share/TfReg/data/domljanovic20-dld.par
/usr/share/TfReg/data/domljanovic20-dlr.par
/usr/share/TfReg/data/epl2011-69.reg
/usr/share/TfReg/data/epl2011-table1.par
/usr/share/TfReg/data/example2.dat
/usr/share/TfReg/data/fakhfakh15-t1.dat
/usr/share/TfReg/data/fakhfakh15-t2.dat
/usr/share/TfReg/data/ferreira19_121_f1.dat
/usr/share/TfReg/data/ferreira19_221_f1.dat
/usr/share/TfReg/data/ferreira19_621_f1.dat
/usr/share/TfReg/data/ferreira19_71_f1.dat
/usr/share/TfReg/data/generic-pb.par
/usr/share/TfReg/data/jb.par
/usr/share/TfReg/data/lna-dna-pb-1021.par
/usr/share/TfReg/data/mctigue04.dat
/usr/share/TfReg/data/moreira15cy3.dat
/usr/share/TfReg/data/moreira15cy5.dat
/usr/share/TfReg/data/new50.reg
/usr/share/TfReg/data/np2009-1-1020.reg
/usr/share/TfReg/data/np2009-1-119.reg
/usr/share/TfReg/data/np2009-1-220.reg
/usr/share/TfReg/data/np2009-1-621.reg
/usr/share/TfReg/data/np2009-1-69.reg
/usr/share/TfReg/data/owczarzy04-1020.dat
/usr/share/TfReg/data/owczarzy04-119.dat
/usr/share/TfReg/data/owczarzy04-220.dat
/usr/share/TfReg/data/owczarzy04-621.dat
/usr/share/TfReg/data/owczarzy04-69.dat
/usr/share/TfReg/data/owczarzy04.dat
/usr/share/TfReg/data/owczarzy12-Mg-0.5.dat
/usr/share/TfReg/data/owczarzy12-Mg-1.5.dat
/usr/share/TfReg/data/owczarzy12-Mg-1.dat
/usr/share/TfReg/data/owczarzy12-Mg-10.dat
/usr/share/TfReg/data/owczarzy12-Mg-125.dat
/usr/share/TfReg/data/owczarzy12-Mg-20.dat
/usr/share/TfReg/data/owczarzy12-Mg-3.dat
/usr/share/TfReg/data/owczarzy12-Mg-50.dat
/usr/share/TfReg/data/owczarzy12-MgK-0.5.dat
/usr/share/TfReg/data/owczarzy12-MgK-1.5.dat
/usr/share/TfReg/data/owczarzy12-MgK-10.dat
/usr/share/TfReg/data/owczarzy12-MgK-20.dat
/usr/share/TfReg/data/owczarzy12-MgK-3.dat
/usr/share/TfReg/data/peyrard09-b0.par
/usr/share/TfReg/data/peyrard09.par
/usr/share/TfReg/data/peyrard09b-dbp.par
/usr/share/TfReg/data/peyrard09b.par
/usr/share/TfReg/data/reg_pb_xia98-t1.reg
/usr/share/TfReg/data/rna-dna-1000.dat
/usr/share/TfReg/data/rna-dna-pb-1000.par
/usr/share/TfReg/data/rna_bulge_group1_adenosine_adj200.dat
/usr/share/TfReg/data/rna_bulge_group1_cytosine_adj200.dat
/usr/share/TfReg/data/rna_bulge_group1_guanosine_adj200.dat
/usr/share/TfReg/data/rna_bulge_group1_uridine_adj200.dat
/usr/share/TfReg/data/rna_pb.par
/usr/share/TfReg/data/rna_pb_1021_ti.par
/usr/share/TfReg/data/rna_pb_1021_un.par
/usr/share/TfReg/data/rna_pb_121_ti_f1.par
/usr/share/TfReg/data/rna_pb_121_un_f1.par
/usr/share/TfReg/data/rna_pb_221_ti_f1.par
/usr/share/TfReg/data/rna_pb_221_un_f1.par
/usr/share/TfReg/data/rna_pb_621_ti_f1.par
/usr/share/TfReg/data/rna_pb_621_un_f1.par
/usr/share/TfReg/data/rna_pb_71_ti_f1.par
/usr/share/TfReg/data/rna_pb_71_un_f1.par
/usr/share/TfReg/data/rna_pb_GU.par
/usr/share/TfReg/data/rna_pb_bulge_group1.par
/usr/share/TfReg/data/rna_pb_bulge_group1_adenosine.reg
/usr/share/TfReg/data/rna_pb_bulge_group1_cytosine.reg
/usr/share/TfReg/data/rna_pb_bulge_group1_guanosine.reg
/usr/share/TfReg/data/rna_pb_bulge_group1_uridine.reg
/usr/share/TfReg/data/silva22-cc-ag.dat
/usr/share/TfReg/data/silva22-cc-ctrl.dat
/usr/share/TfReg/data/silva22-tt-ctrl.dat
/usr/share/TfReg/data/silva22-tt-hg.dat
/usr/share/TfReg/data/stat_pb_owczarzy04-1020.reg
/usr/share/TfReg/data/stat_pb_owczarzy04-119.reg
/usr/share/TfReg/data/stat_pb_owczarzy04-220.reg
/usr/share/TfReg/data/stat_pb_owczarzy04-621.reg
/usr/share/TfReg/data/stat_pb_owczarzy04-69.reg
/usr/share/TfReg/data/tapiarojo10-nobarrier.par
/usr/share/TfReg/data/tapiarojo10.par
/usr/share/TfReg/data/test.reg
/usr/share/TfReg/data/tna-1000.par
/usr/share/TfReg/data/tna-tm.dat
/usr/share/TfReg/data/var_jb2_owczarzy04_init.par
/usr/share/TfReg/data/var_pb_owczarzy04_init.par
/usr/share/TfReg/data/watkins05ia.dat
/usr/share/TfReg/data/watkins05ic.dat
/usr/share/TfReg/data/watkins05ig.dat
/usr/share/TfReg/data/watkins05ii.dat
/usr/share/TfReg/data/watkins05it.dat
/usr/share/TfReg/data/weber06-1.par
/usr/share/TfReg/data/xia98-t1.dat
/usr/share/TfReg/data/you06.dat
/usr/share/TfReg/examples
/usr/share/TfReg/examples/deoxyinosine_pb.sh
/usr/share/TfReg/examples/epl2011-69.sh
/usr/share/TfReg/examples/epl2011-initial.sh
/usr/share/TfReg/examples/epl2011-table1.sh
/usr/share/TfReg/examples/np2009-1.sh
/usr/share/TfReg/examples/np2009-2.sh
/usr/share/TfReg/examples/open-1.sh
/usr/share/TfReg/examples/open-2.sh
/usr/share/TfReg/examples/open-3.sh
/usr/share/TfReg/examples/open-4.sh
/usr/share/TfReg/examples/open-cy3.sh
/usr/share/TfReg/examples/open-rna-3.pl
/usr/share/TfReg/examples/open-rna-gu.sh
/usr/share/TfReg/examples/predict-1.sh
/usr/share/TfReg/examples/predict-2.sh
/usr/share/TfReg/examples/predict-mm-cd.sh
/usr/share/TfReg/examples/predict-mm-ci.sh
/usr/share/TfReg/examples/predict-rna-1.sh
/usr/share/TfReg/examples/predict-salt50.sh
/usr/share/TfReg/examples/regression-lna.sh
/usr/share/TfReg/examples/rna-bulges-predict.sh
/usr/share/TfReg/examples/rna-gu-nncheck.sh
/usr/share/TfReg/examples/tfreg-verify.pl
/usr/share/TfReg/examples/verify
/usr/share/TfReg/examples/verify-dna-mg.sh
/usr/share/TfReg/examples/verify-mm-cd.sh
/usr/share/TfReg/examples/verify-mm-ci.sh
/usr/share/TfReg/examples/verify-rna-dna.sh
/usr/share/TfReg/examples/verify-rna-ti-salt.sh
/usr/share/TfReg/examples/verify-rna-ti.sh
/usr/share/TfReg/examples/verify-rna-un-salt.sh
/usr/share/TfReg/examples/verify-rna-un.sh
/usr/share/TfReg/examples/verify-terminal-dna.sh
/usr/share/TfReg/examples/verify-tna.sh
/usr/share/TfReg/examples/verify/deoxyinosine_pb_ia.dat
/usr/share/TfReg/examples/verify/deoxyinosine_pb_ia.reg
/usr/share/TfReg/examples/verify/deoxyinosine_pb_ia.tex
/usr/share/TfReg/examples/verify/deoxyinosine_pb_ia.ver
/usr/share/TfReg/examples/verify/deoxyinosine_pb_ic.dat
/usr/share/TfReg/examples/verify/deoxyinosine_pb_ic.reg
/usr/share/TfReg/examples/verify/deoxyinosine_pb_ic.tex
/usr/share/TfReg/examples/verify/deoxyinosine_pb_ic.ver
/usr/share/TfReg/examples/verify/deoxyinosine_pb_ig.dat
/usr/share/TfReg/examples/verify/deoxyinosine_pb_ig.reg
/usr/share/TfReg/examples/verify/deoxyinosine_pb_ig.tex
/usr/share/TfReg/examples/verify/deoxyinosine_pb_ig.ver
/usr/share/TfReg/examples/verify/deoxyinosine_pb_ii.dat
/usr/share/TfReg/examples/verify/deoxyinosine_pb_ii.reg
/usr/share/TfReg/examples/verify/deoxyinosine_pb_ii.tex
/usr/share/TfReg/examples/verify/deoxyinosine_pb_ii.ver
/usr/share/TfReg/examples/verify/deoxyinosine_pb_it.dat
/usr/share/TfReg/examples/verify/deoxyinosine_pb_it.reg
/usr/share/TfReg/examples/verify/deoxyinosine_pb_it.tex
/usr/share/TfReg/examples/verify/deoxyinosine_pb_it.ver
/usr/share/TfReg/examples/verify/epl2011-69.dat
/usr/share/TfReg/examples/verify/epl2011-69.reg
/usr/share/TfReg/examples/verify/epl2011-69.tex
/usr/share/TfReg/examples/verify/epl2011-69.ver
/usr/share/TfReg/examples/verify/epl2011-initial.dat
/usr/share/TfReg/examples/verify/epl2011-initial.reg
/usr/share/TfReg/examples/verify/epl2011-initial.tex
/usr/share/TfReg/examples/verify/epl2011-initial.ver
/usr/share/TfReg/examples/verify/epl2011-table1.dat
/usr/share/TfReg/examples/verify/epl2011-table1.reg
/usr/share/TfReg/examples/verify/epl2011-table1.tex
/usr/share/TfReg/examples/verify/epl2011-table1.ver
/usr/share/TfReg/examples/verify/gauss-legendre-400.dat
/usr/share/TfReg/examples/verify/np2009-1-1020.dat
/usr/share/TfReg/examples/verify/np2009-1-1020.reg
/usr/share/TfReg/examples/verify/np2009-1-1020.tex
/usr/share/TfReg/examples/verify/np2009-1-1020.ver
/usr/share/TfReg/examples/verify/np2009-1-119.dat
/usr/share/TfReg/examples/verify/np2009-1-119.reg
/usr/share/TfReg/examples/verify/np2009-1-119.tex
/usr/share/TfReg/examples/verify/np2009-1-119.ver
/usr/share/TfReg/examples/verify/np2009-1-220.dat
/usr/share/TfReg/examples/verify/np2009-1-220.reg
/usr/share/TfReg/examples/verify/np2009-1-220.tex
/usr/share/TfReg/examples/verify/np2009-1-220.ver
/usr/share/TfReg/examples/verify/np2009-1-621.dat
/usr/share/TfReg/examples/verify/np2009-1-621.reg
/usr/share/TfReg/examples/verify/np2009-1-621.tex
/usr/share/TfReg/examples/verify/np2009-1-621.ver
/usr/share/TfReg/examples/verify/np2009-1-69.dat
/usr/share/TfReg/examples/verify/np2009-1-69.reg
/usr/share/TfReg/examples/verify/np2009-1-69.tex
/usr/share/TfReg/examples/verify/np2009-1-69.ver
/usr/share/TfReg/examples/verify/np2009-2-69.dat
/usr/share/TfReg/examples/verify/np2009-2-69.tex
/usr/share/TfReg/examples/verify/np2009-2-69.ver
/usr/share/TfReg/examples/verify/open-1
/usr/share/TfReg/examples/verify/open-1.dat
/usr/share/TfReg/examples/verify/open-1/dna-pb-69-CG_CG-270-A.TA_AT
/usr/share/TfReg/examples/verify/open-1/dna-pb-69-CG_CG-270-C.AT_AT
/usr/share/TfReg/examples/verify/open-1/dna-pb-69-CG_CG-270-C.AT_CG
/usr/share/TfReg/examples/verify/open-1/dna-pb-69-CG_CG-270-C.AT_GC
/usr/share/TfReg/examples/verify/open-1/dna-pb-69-CG_CG-270-C.AT_TA
/usr/share/TfReg/examples/verify/open-1/dna-pb-69-CG_CG-270-C.CG_AT
/usr/share/TfReg/examples/verify/open-1/dna-pb-69-CG_CG-270-C.CG_CG
/usr/share/TfReg/examples/verify/open-1/dna-pb-69-CG_CG-270-C.CG_GC
/usr/share/TfReg/examples/verify/open-1/dna-pb-69-CG_CG-270-C.GC_AT
/usr/share/TfReg/examples/verify/open-1/dna-pb-69-CG_CG-270-C.GC_CG
/usr/share/TfReg/examples/verify/open-1/dna-pb-69-CG_CG-270-C.TA_AT
/usr/share/TfReg/examples/verify/open-1/dna-pb-69-CG_CG-270-Y
/usr/share/TfReg/examples/verify/open-1/dna-pb-69-CG_CG-270-eigenvalues
/usr/share/TfReg/examples/verify/open-1/dna-pb-69-CG_CG-270-eigenvectors
/usr/share/TfReg/examples/verify/open-1/gauss-legendre-400.dat
/usr/share/TfReg/examples/verify/open-cy3-A-A-150.dat
/usr/share/TfReg/examples/verify/open-cy3-A-A-180.dat
/usr/share/TfReg/examples/verify/open-cy3-A-A-250.dat
/usr/share/TfReg/examples/verify/open-cy3-A-C-150.dat
/usr/share/TfReg/examples/verify/open-cy3-A-C-180.dat
/usr/share/TfReg/examples/verify/open-cy3-A-C-250.dat
/usr/share/TfReg/examples/verify/open-cy3-A-G-150.dat
/usr/share/TfReg/examples/verify/open-cy3-A-G-180.dat
/usr/share/TfReg/examples/verify/open-cy3-A-G-250.dat
/usr/share/TfReg/examples/verify/open-cy3-A-T-150.dat
/usr/share/TfReg/examples/verify/open-cy3-A-T-180.dat
/usr/share/TfReg/examples/verify/open-cy3-A-T-250.dat
/usr/share/TfReg/examples/verify/open-cy3-C-A-150.dat
/usr/share/TfReg/examples/verify/open-cy3-C-A-180.dat
/usr/share/TfReg/examples/verify/open-cy3-C-A-250.dat
/usr/share/TfReg/examples/verify/open-cy3-C-C-150.dat
/usr/share/TfReg/examples/verify/open-cy3-C-C-180.dat
/usr/share/TfReg/examples/verify/open-cy3-C-C-250.dat
/usr/share/TfReg/examples/verify/open-cy3-C-G-150.dat
/usr/share/TfReg/examples/verify/open-cy3-C-G-180.dat
/usr/share/TfReg/examples/verify/open-cy3-C-G-250.dat
/usr/share/TfReg/examples/verify/open-cy3-C-T-150.dat
/usr/share/TfReg/examples/verify/open-cy3-C-T-180.dat
/usr/share/TfReg/examples/verify/open-cy3-C-T-250.dat
/usr/share/TfReg/examples/verify/open-cy3-G-A-150.dat
/usr/share/TfReg/examples/verify/open-cy3-G-A-180.dat
/usr/share/TfReg/examples/verify/open-cy3-G-A-250.dat
/usr/share/TfReg/examples/verify/open-cy3-G-C-150.dat
/usr/share/TfReg/examples/verify/open-cy3-G-C-180.dat
/usr/share/TfReg/examples/verify/open-cy3-G-C-250.dat
/usr/share/TfReg/examples/verify/open-cy3-G-G-150.dat
/usr/share/TfReg/examples/verify/open-cy3-G-G-180.dat
/usr/share/TfReg/examples/verify/open-cy3-G-G-250.dat
/usr/share/TfReg/examples/verify/open-cy3-G-T-150.dat
/usr/share/TfReg/examples/verify/open-cy3-G-T-180.dat
/usr/share/TfReg/examples/verify/open-cy3-G-T-250.dat
/usr/share/TfReg/examples/verify/open-cy3-T-A-150.dat
/usr/share/TfReg/examples/verify/open-cy3-T-A-180.dat
/usr/share/TfReg/examples/verify/open-cy3-T-A-250.dat
/usr/share/TfReg/examples/verify/open-cy3-T-C-150.dat
/usr/share/TfReg/examples/verify/open-cy3-T-C-180.dat
/usr/share/TfReg/examples/verify/open-cy3-T-C-250.dat
/usr/share/TfReg/examples/verify/open-cy3-T-G-150.dat
/usr/share/TfReg/examples/verify/open-cy3-T-G-180.dat
/usr/share/TfReg/examples/verify/open-cy3-T-G-250.dat
/usr/share/TfReg/examples/verify/open-cy3-T-T-150.dat
/usr/share/TfReg/examples/verify/open-cy3-T-T-180.dat
/usr/share/TfReg/examples/verify/open-cy3-T-T-250.dat
/usr/share/TfReg/examples/verify/open-cy3-X-A-150.dat
/usr/share/TfReg/examples/verify/open-cy3-X-A-180.dat
/usr/share/TfReg/examples/verify/open-cy3-X-A-250.dat
/usr/share/TfReg/examples/verify/open-cy3-X-C-150.dat
/usr/share/TfReg/examples/verify/open-cy3-X-C-180.dat
/usr/share/TfReg/examples/verify/open-cy3-X-C-250.dat
/usr/share/TfReg/examples/verify/open-cy3-X-G-150.dat
/usr/share/TfReg/examples/verify/open-cy3-X-G-180.dat
/usr/share/TfReg/examples/verify/open-cy3-X-G-250.dat
/usr/share/TfReg/examples/verify/open-cy3-X-T-150.dat
/usr/share/TfReg/examples/verify/open-cy3-X-T-180.dat
/usr/share/TfReg/examples/verify/open-cy3-X-T-250.dat
/usr/share/TfReg/examples/verify/open-cy3-matrix-dir
/usr/share/TfReg/examples/verify/open-cy3-matrix-dir/dna_pb_cy-CG_CG-150-A.AT_GC
/usr/share/TfReg/examples/verify/open-cy3-matrix-dir/dna_pb_cy-CG_CG-150-A.CG_AT
/usr/share/TfReg/examples/verify/open-cy3-matrix-dir/dna_pb_cy-CG_CG-150-A.CG_CG
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