SEARCH
NEW RPMS
DIRECTORIES
ABOUT
FAQ
VARIOUS
BLOG

 
 

Gambit rpm build for : OpenSuSE. For other distributions click Gambit.

Name : Gambit
Version : 0.4.145 Vendor : obs://build_opensuse_org/science
Release : 1.38 Date : 2013-08-16 04:55:54
Group : Productivity/Scientific/Other Source RPM : Gambit-0.4.145-1.38.src.rpm
Size : 0.93 MB
Packager : (none)
Summary : GUI application for sequence visualization and analysis
Description :
This software takes advantage of the indexing features of the (fairly) recently standardized BAM sequence alignment format that allows rapid access to genomic data, with minimal startup time and re-rendering delay. Gambit also supports a variety of annotation formats (BED, GFF, GFF3, VCF) “out-of-the-box” for displaying gene/region annotations as well as SNP entries.

Bioinformatics analysis of sequence data currently requires specialized expertise and is rapidly becoming a bottleneck. Analysis needs of smaller biology laboratories can be served if the visualization software integrates essential analytical functionality. Such functionality includes PCR primer design to support candidate SNP validation experiments; connecting to common databases; exporting data from specific regions of the chromosome for detailed and focused analysis.

RPM found in directory: /packages/linux-pbone/ftp5.gwdg.de/pub/opensuse/repositories/science/openSUSE_Factory/x86_64

Content of RPM  Provides Requires

Hmm ... It's impossible ;-) This RPM doesn't exist on any FTP server

Provides :
Gambit
Gambit(x86-64)
libgambit_fileformat_bam.so()(64bit)
libgambit_fileformat_bed.so()(64bit)
libgambit_fileformat_fasta.so()(64bit)
libgambit_fileformat_gff.so()(64bit)
libgambit_fileformat_gff3.so()(64bit)
libgambit_fileformat_vcf.so()(64bit)

Requires :
libc.so.6()(64bit)
libc.so.6(GLIBC_2.2.5)(64bit)
libc.so.6(GLIBC_2.14)(64bit)
libQtCore.so.4()(64bit)
libstdc++.so.6()(64bit)
rpmlib(PayloadFilesHavePrefix) <= 4.0-1
libpthread.so.0(GLIBC_2.2.5)(64bit)
libpthread.so.0()(64bit)
libstdc++.so.6(GLIBCXX_3.4)(64bit)
rpmlib(CompressedFileNames) <= 3.0.4-1
libstdc++.so.6(CXXABI_1.3)(64bit)
libQtGui.so.4()(64bit)
rpmlib(PayloadIsLzma) <= 4.4.6-1
libgcc_s.so.1(GCC_3.0)(64bit)
libgcc_s.so.1()(64bit)
libz.so.1()(64bit)


Content of RPM :
/usr/bin/Gambit
/usr/lib64/Gambit
/usr/lib64/Gambit/plugins
/usr/lib64/Gambit/plugins/libgambit_fileformat_bam.so
/usr/lib64/Gambit/plugins/libgambit_fileformat_bed.so
/usr/lib64/Gambit/plugins/libgambit_fileformat_fasta.so
/usr/lib64/Gambit/plugins/libgambit_fileformat_gff.so
/usr/lib64/Gambit/plugins/libgambit_fileformat_gff3.so
/usr/lib64/Gambit/plugins/libgambit_fileformat_vcf.so
/usr/share/applications/Gambit.desktop
/usr/share/doc/packages/Gambit
/usr/share/doc/packages/Gambit/LICENSE
/usr/share/doc/packages/Gambit/README

 
ICM