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bowtie rpm build for : RedHat EL 5. For other distributions click bowtie.

Name : bowtie
Version : 0.12.7 Vendor : Fedora Project
Release : 2.el5 Date : 2011-06-28 15:16:08
Group : Applications/Engineering Source RPM : bowtie-0.12.7-2.el5.src.rpm
Size : 12.98 MB
Packager : Fedora Project
Summary : An ultrafast, memory-efficient short read aligner
Description :

Bowtie, an ultrafast, memory-efficient short read aligner for short
DNA sequences (reads) from next-gen sequencers. Please cite: Langmead
B, et al. Ultrafast and memory-efficient alignment of short DNA
sequences to the human genome. Genome Biol 10:R25.

RPM found in directory: /packages/linux-pbone/archive.fedoraproject.org/epel/5/i386

Content of RPM  Changelog  Provides Requires

Download
ftp.icm.edu.pl  bowtie-0.12.7-2.el5.i386.rpm
     Search for other platforms
bowtie-0.12.7-2.el5.sparc.rpm
bowtie-0.12.7-2.el5.alpha.rpm
bowtie-0.12.7-2.el5.ppc.rpm
bowtie-0.12.7-2.el5.ia64.rpm
bowtie-0.12.7-2.el5.s390.rpm

Provides :
bowtie

Requires :
perl(Getopt::Long)
perl(FindBin)
libstdc++.so.6(GLIBCXX_3.4)
libpthread.so.0(GLIBC_2.2)
libpthread.so.0
libc.so.6(GLIBC_2.2)
libc.so.6(GLIBC_2.0)
/bin/sh
rtld(GNU_HASH)
libpthread.so.0(GLIBC_2.0)
rpmlib(PayloadFilesHavePrefix) <= 4.0-1
/usr/bin/perl
libm.so.6(GLIBC_2.0)
libm.so.6
rpmlib(CompressedFileNames) <= 3.0.4-1
libc.so.6(GLIBC_2.4)
libstdc++.so.6
perl(List::Util)
perl(warnings)
libc.so.6(GLIBC_2.1)
libgcc_s.so.1
libc.so.6(GLIBC_2.1.3)
libgcc_s.so.1(GCC_3.0)
libpthread.so.0(GLIBC_2.1)
libstdc++.so.6(CXXABI_1.3)
perl(strict)
libc.so.6


Content of RPM :
/usr/bin/bowtie
/usr/bin/bowtie-build
/usr/bin/bowtie-inspect
/usr/share/bowtie
/usr/share/bowtie/genomes
/usr/share/bowtie/genomes/NC_008253.fna
/usr/share/bowtie/indexes
/usr/share/bowtie/indexes/e_coli.1.ebwt
/usr/share/bowtie/indexes/e_coli.2.ebwt
/usr/share/bowtie/indexes/e_coli.3.ebwt
/usr/share/bowtie/indexes/e_coli.4.ebwt
/usr/share/bowtie/indexes/e_coli.README
/usr/share/bowtie/indexes/e_coli.rev.1.ebwt
/usr/share/bowtie/indexes/e_coli.rev.2.ebwt
/usr/share/bowtie/reads
/usr/share/bowtie/reads/e_coli_1000.fa
/usr/share/bowtie/reads/e_coli_1000.fq
/usr/share/bowtie/reads/e_coli_1000.raw
/usr/share/bowtie/reads/e_coli_10000snp.fa
/usr/share/bowtie/reads/e_coli_10000snp.fq
/usr/share/bowtie/reads/e_coli_1000_1.fa
/usr/share/bowtie/reads/e_coli_1000_1.fq
/usr/share/bowtie/reads/e_coli_1000_2.fa
/usr/share/bowtie/reads/e_coli_1000_2.fq
/usr/share/bowtie/scripts
/usr/share/bowtie/scripts/best_verify.pl
/usr/share/bowtie/scripts/bs_mapability.pl
/usr/share/bowtie/scripts/build_test.sh
/usr/share/bowtie/scripts/colorize_fasta.pl
/usr/share/bowtie/scripts/colorize_fastq.pl
There is 41 files more in these RPM.

 
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