SEARCH
NEW RPMS
DIRECTORIES
ABOUT
FAQ
VARIOUS
BLOG

 
 

samtools rpm build for : RedHat EL 5. For other distributions click samtools.

Name : samtools
Version : 0.1.18 Vendor : Fedora Project
Release : 2.el5 Date : 2011-10-26 18:52:50
Group : Applications/Engineering Source RPM : samtools-0.1.18-2.el5.src.rpm
Size : 1.05 MB
Packager : Fedora Project
Summary : Tools for nucleotide sequence alignments in the SAM format
Description :
SAM (Sequence Alignment/Map) is a flexible generic format for storing
nucleotide sequence alignment.
SAM Tools provide various utilities for manipulating alignments in the
SAM format, including sorting, merging, indexing and generating
alignments in a per-position format.

RPM found in directory: /packages/linux-pbone/archive.fedoraproject.org/epel/5/i386

Content of RPM  Changelog  Provides Requires

Download
ftp.icm.edu.pl  samtools-0.1.18-2.el5.i386.rpm
     Search for other platforms
samtools-0.1.18-2.el5.sparc.rpm
samtools-0.1.18-2.el5.alpha.rpm
samtools-0.1.18-2.el5.ppc.rpm
samtools-0.1.18-2.el5.ia64.rpm
samtools-0.1.18-2.el5.s390.rpm

Provides :
samtools

Requires :
perl(Getopt::Long)
libncurses.so.5
perl(Getopt::Std)
perl(File::Spec)
libc.so.6(GLIBC_2.2)
libc.so.6(GLIBC_2.0)
/usr/bin/env
rtld(GNU_HASH)
rpmlib(PayloadFilesHavePrefix) <= 4.0-1
/usr/bin/perl
libm.so.6(GLIBC_2.0)
libc.so.6(GLIBC_2.3)
libm.so.6
rpmlib(CompressedFileNames) <= 3.0.4-1
libc.so.6(GLIBC_2.4)
perl(List::Util)
perl(warnings)
perl(constant)
libc.so.6(GLIBC_2.1)
perl(Carp)
libz.so.1
/usr/bin/python
perl(Data::Dumper)
perl(strict)
libc.so.6
libc.so.6(GLIBC_2.3.4)


Content of RPM :
/usr/bin/bcftools
/usr/bin/blast2sam.pl
/usr/bin/bowtie2sam.pl
/usr/bin/export2sam.pl
/usr/bin/interpolate_sam.pl
/usr/bin/maq2sam-long
/usr/bin/maq2sam-short
/usr/bin/md5fa
/usr/bin/md5sum-lite
/usr/bin/novo2sam.pl
/usr/bin/psl2sam.pl
/usr/bin/razip
/usr/bin/sam2vcf.pl
/usr/bin/samtools
/usr/bin/samtools.pl
/usr/bin/seqtk
/usr/bin/soap2sam.pl
/usr/bin/varfilter.py
/usr/bin/varfilter.pyc
/usr/bin/varfilter.pyo
/usr/bin/vcfutils.pl
/usr/bin/wgsim
/usr/bin/wgsim_eval.pl
/usr/bin/zoom2sam.pl
/usr/share/doc/samtools-0.1.18
/usr/share/doc/samtools-0.1.18/AUTHORS
/usr/share/doc/samtools-0.1.18/COPYING
/usr/share/doc/samtools-0.1.18/ChangeLog
/usr/share/doc/samtools-0.1.18/INSTALL
/usr/share/doc/samtools-0.1.18/NEWS
There is 12 files more in these RPM.

 
ICM