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BEDTools rpm build for : Fedora 13. For other distributions click BEDTools.

Name : BEDTools
Version : 2.12.0 Vendor : Fedora Project
Release : 1.fc13 Date : 2011-04-12 16:14:55
Group : Applications/Engineering Source RPM : BEDTools-2.12.0-1.fc13.src.rpm
Size : 5.25 MB
Packager : Fedora Project
Summary : A flexible suite of utilities for comparing genomic features
Description :

The BEDTools utilities allow one to address common genomics tasks such
as finding feature overlaps and computing coverage. The utilities are
largely based on four widely-used file formats: BED, GFF/GTF, VCF, and
SAM/BAM. Using BEDTools, one can develop sophisticated pipelines that
answer complicated research questions by \"streaming\" several BEDTools
together.

RPM found in directory: /packages/linux-pbone/archive.fedoraproject.org/fedora/linux/updates/13/x86_64

Content of RPM  Changelog  Provides Requires

Download
ftp.icm.edu.pl  BEDTools-2.12.0-1.fc13.x86_64.rpm
     

Provides :
BEDTools
BEDTools(x86-64)

Requires :
libc.so.6()(64bit)
libc.so.6(GLIBC_2.3.4)(64bit)
libc.so.6(GLIBC_2.2.5)(64bit)
rtld(GNU_HASH)
libstdc++.so.6(GLIBCXX_3.4.11)(64bit)
libstdc++.so.6()(64bit)
rpmlib(PayloadFilesHavePrefix) <= 4.0-1
libstdc++.so.6(GLIBCXX_3.4)(64bit)
rpmlib(CompressedFileNames) <= 3.0.4-1
rpmlib(FileDigests) <= 4.6.0-1
libc.so.6(GLIBC_2.4)(64bit)
libstdc++.so.6(CXXABI_1.3)(64bit)
libstdc++.so.6(GLIBCXX_3.4.9)(64bit)
libgcc_s.so.1(GCC_3.0)(64bit)
libm.so.6()(64bit)
rpmlib(PayloadIsXz) <= 5.2-1
libgcc_s.so.1()(64bit)
libz.so.1()(64bit)


Content of RPM :
/usr/bin/annotateBed
/usr/bin/bamToBed
/usr/bin/bed12ToBed6
/usr/bin/bedToBam
/usr/bin/bedToIgv
/usr/bin/closestBed
/usr/bin/complementBed
/usr/bin/coverageBed
/usr/bin/cuffToTrans
/usr/bin/fastaFromBed
/usr/bin/fjoin
/usr/bin/flankBed
/usr/bin/genomeCoverageBed
/usr/bin/intersectBed
/usr/bin/linksBed
/usr/bin/maskFastaFromBed
/usr/bin/mergeBed
/usr/bin/overlap
/usr/bin/pairToBed
/usr/bin/pairToPair
/usr/bin/shuffleBed
/usr/bin/slopBed
/usr/bin/sortBed
/usr/bin/subtractBed
/usr/bin/unionBedGraphs
/usr/bin/windowBed
/usr/share/BEDTools
/usr/share/BEDTools/data
/usr/share/BEDTools/data/._rmsk.hg18.chr21.bed
/usr/share/BEDTools/data/knownGene.hg18.chr21.bed
There is 10 files more in these RPM.

 
ICM