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R-GenomicFeatures rpm build for : Fedora 18. For other distributions click R-GenomicFeatures.

Name : R-GenomicFeatures
Version : 1.12.0 Vendor : Fedora Project
Release : 1.fc18 Date : 2013-04-22 20:22:35
Group : Applications/Engineering Source RPM : R-GenomicFeatures-1.12.0-1.fc18.src.rpm
Size : 2.21 MB
Packager : Fedora Project
Summary : Tools for making and manipulating transcript centric annotations
Description :
A set of tools and methods for making and manipulating transcript centric
annotations. With these tools the user can easily download the genomic
locations of the transcripts, exons and cds of a given organism, from either
the UCSC Genome Browser or a BioMart database (more sources will be supported
in the future). This information is then stored in a local database that
keeps track of the relationship between transcripts, exons, cds and genes.
Flexible methods are provided for extracting the desired features in a
convenient format.

RPM found in directory: /packages/linux-pbone/archive.fedoraproject.org/fedora/linux/updates/18/x86_64

Content of RPM  Changelog  Provides Requires

Download
ftp.icm.edu.pl  R-GenomicFeatures-1.12.0-1.fc18.noarch.rpm
ftp.icm.edu.pl  R-GenomicFeatures-1.12.0-1.fc18.noarch.rpm
ftp.icm.edu.pl  R-GenomicFeatures-1.12.0-1.fc18.noarch.rpm
ftp.icm.edu.pl  R-GenomicFeatures-1.12.0-1.fc18.noarch.rpm
     

Provides :
R-GenomicFeatures

Requires :
R-rtracklayer
R-Biobase
rpmlib(PayloadFilesHavePrefix) <= 4.0-1
R-GenomicRanges
R-AnnotationDbi
rpmlib(CompressedFileNames) <= 3.0.4-1
rpmlib(FileDigests) <= 4.6.0-1
R-RCurl
R-core => 3.0.0
R-IRanges
R-RSQLite
R-BSgenome
rpmlib(PayloadIsXz) <= 5.2-1
R-DBI
R-Biostrings
R-utils
R-biomaRt


Content of RPM :
/usr/share/R/library/GenomicFeatures/DESCRIPTION
/usr/share/R/library/GenomicFeatures/INDEX
/usr/share/R/library/GenomicFeatures/Meta
/usr/share/R/library/GenomicFeatures/Meta/Rd.rds
/usr/share/R/library/GenomicFeatures/Meta/hsearch.rds
/usr/share/R/library/GenomicFeatures/Meta/links.rds
/usr/share/R/library/GenomicFeatures/Meta/nsInfo.rds
/usr/share/R/library/GenomicFeatures/Meta/package.rds
/usr/share/R/library/GenomicFeatures/Meta/vignette.rds
/usr/share/R/library/GenomicFeatures/NAMESPACE
/usr/share/R/library/GenomicFeatures/NEWS
/usr/share/R/library/GenomicFeatures/R
/usr/share/R/library/GenomicFeatures/R/GenomicFeatures
/usr/share/R/library/GenomicFeatures/R/GenomicFeatures.rdb
/usr/share/R/library/GenomicFeatures/R/GenomicFeatures.rdx
/usr/share/R/library/GenomicFeatures/doc
/usr/share/R/library/GenomicFeatures/doc/GenomicFeatures.R
/usr/share/R/library/GenomicFeatures/doc/GenomicFeatures.Rnw
/usr/share/R/library/GenomicFeatures/doc/GenomicFeatures.pdf
/usr/share/R/library/GenomicFeatures/doc/index.html
/usr/share/R/library/GenomicFeatures/extdata
/usr/share/R/library/GenomicFeatures/extdata/Aedes_aegypti.partial.gtf
/usr/share/R/library/GenomicFeatures/extdata/Biomart_Ensembl_sample.sqlite
/usr/share/R/library/GenomicFeatures/extdata/FeatureDb.sqlite
/usr/share/R/library/GenomicFeatures/extdata/TESTFLYGFF3.sqlite
/usr/share/R/library/GenomicFeatures/extdata/TESTGFF.sqlite
/usr/share/R/library/GenomicFeatures/extdata/TESTGTF.sqlite
/usr/share/R/library/GenomicFeatures/extdata/UCSC_knownGene_sample.rda
/usr/share/R/library/GenomicFeatures/extdata/UCSC_knownGene_sample.sqlite
/usr/share/R/library/GenomicFeatures/extdata/UCSC_knownToLocusLink_sample.rda
There is 57 files more in these RPM.

 
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