| Name : fastx_toolkit
| |
| Version : 0.0.13
| Vendor : Fedora Project
|
| Release : 4.fc14
| Date : 2011-05-27 12:19:08
|
| Group : Applications/Engineering
| Source RPM : fastx_toolkit-0.0.13-4.fc14.src.rpm
|
| Size : 0.33 MB
| |
| Packager : Fedora Project
| |
| Summary : Tools to process short-reads FASTA/FASTQ files
|
Description :
The FASTX-Toolkit is a collection of command line tools for
Short-Reads FASTA/FASTQ files preprocessing.
Next-Generation sequencing machines usually produce FASTA or FASTQ
files, containing multiple short-reads sequences (possibly with
quality information).
The main processing of such FASTA/FASTQ files is mapping (aka
aligning) the sequences to reference genomes or other databases using
specialized programs. Example of such mapping programs are: Blat,
SHRiMP, LastZ, MAQ and many many others.
However, It is sometimes more productive to preprocess the FASTA/FASTQ
files before mapping the sequences to the genome - manipulating the
sequences to produce better mapping results.
The FASTX-Toolkit tools perform some of these preprocessing tasks.
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RPM found in directory: /packages/linux-pbone/archive.fedoraproject.org/fedora/linux/updates/testing/14/i386 |
