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R-GenomicFeatures rpm build for : Mandrake Other. For other distributions click R-GenomicFeatures.

Name : R-GenomicFeatures
Version : 1.6.8 Vendor : Mandriva
Release : 1 Date : 2012-02-18 08:39:39
Group : Sciences/Mathematics Source RPM : R-GenomicFeatures-1.6.8-1.src.rpm
Size : 0.72 MB
Packager : Paulo Andrade < pcpa_mandriva_com_br>
Summary : Tools for making and manipulating transcript centric annotations
Description :
A set of tools and methods for making and manipulating transcript centric
annotations. With these tools the user can easily download the genomic
locations of the transcripts, exons and cds of a given organism, from
either the UCSC Genome Browser or a BioMart database (more sources will be
supported in the future). This information is then stored in a local
database that keeps track of the relationship between transcripts, exons,
cds and genes. Flexible methods are provided for extracting the desired
features in a convenient format.

RPM found in directory: /vol/rzm6/linux-mandriva/devel/cooker/i586/media/contrib/release

Content of RPM  Changelog  Provides Requires

Download
ftp.icm.edu.pl  R-GenomicFeatures-1.6.8-1-mdv2012.0.i586.rpm
     Search for other platforms
R-GenomicFeatures-1.6.8-1-mdv2012.0.sparc.rpm
R-GenomicFeatures-1.6.8-1-mdv2012.0.alpha.rpm
R-GenomicFeatures-1.6.8-1-mdv2012.0.ppc.rpm
R-GenomicFeatures-1.6.8-1-mdv2012.0.ia64.rpm
R-GenomicFeatures-1.6.8-1-mdv2012.0.s390.rpm

Provides :
R-GenomicFeatures

Requires :
R-IRanges
R-GenomicRanges
R-AnnotationDbi
R-methods
R-DBI
R-RSQLite
R-Biostrings
R-rtracklayer
R-biomaRt
R-RCurl
R-utils
R-Biobase
R-org.Mm.eg.db
R-BSgenome
R-BSgenome.Hsapiens.UCSC.hg18
R-BSgenome.Celegans.UCSC.ce2
R-RUnit
rpmlib(PayloadIsXz) <= 5.2-1


Content of RPM :
/usr/lib/R/library/GenomicFeatures
/usr/lib/R/library/GenomicFeatures/DESCRIPTION
/usr/lib/R/library/GenomicFeatures/INDEX
/usr/lib/R/library/GenomicFeatures/Meta
/usr/lib/R/library/GenomicFeatures/Meta/Rd.rds
/usr/lib/R/library/GenomicFeatures/Meta/hsearch.rds
/usr/lib/R/library/GenomicFeatures/Meta/links.rds
/usr/lib/R/library/GenomicFeatures/Meta/nsInfo.rds
/usr/lib/R/library/GenomicFeatures/Meta/package.rds
/usr/lib/R/library/GenomicFeatures/Meta/vignette.rds
/usr/lib/R/library/GenomicFeatures/NAMESPACE
/usr/lib/R/library/GenomicFeatures/NEWS
/usr/lib/R/library/GenomicFeatures/R
/usr/lib/R/library/GenomicFeatures/R/GenomicFeatures
/usr/lib/R/library/GenomicFeatures/R/GenomicFeatures.rdb
/usr/lib/R/library/GenomicFeatures/R/GenomicFeatures.rdx
/usr/lib/R/library/GenomicFeatures/doc
/usr/lib/R/library/GenomicFeatures/doc/GenomicFeatures.R
/usr/lib/R/library/GenomicFeatures/doc/GenomicFeatures.Rnw
/usr/lib/R/library/GenomicFeatures/doc/GenomicFeatures.pdf
/usr/lib/R/library/GenomicFeatures/doc/index.html
/usr/lib/R/library/GenomicFeatures/extdata
/usr/lib/R/library/GenomicFeatures/extdata/Biomart_Ensembl_sample.sqlite
/usr/lib/R/library/GenomicFeatures/extdata/FeatureDb.sqlite
/usr/lib/R/library/GenomicFeatures/extdata/UCSC_knownGene_sample.rda
/usr/lib/R/library/GenomicFeatures/extdata/UCSC_knownGene_sample.sqlite
/usr/lib/R/library/GenomicFeatures/extdata/UCSC_knownToLocusLink_sample.rda
/usr/lib/R/library/GenomicFeatures/help
/usr/lib/R/library/GenomicFeatures/help/AnIndex
/usr/lib/R/library/GenomicFeatures/help/GenomicFeatures.rdb
There is 39 files more in these RPM.

 
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