SEARCH
NEW RPMS
DIRECTORIES
ABOUT
FAQ
VARIOUS
BLOG

 
 

R-pasilla rpm build for : Mandrake Other. For other distributions click R-pasilla.

Name : R-pasilla
Version : 0.2.11 Vendor : Mandriva
Release : 1 Date : 2012-02-18 22:23:36
Group : Sciences/Mathematics Source RPM : R-pasilla-0.2.11-1.src.rpm
Size : 22.99 MB
Packager : Paulo Andrade < pcpa_mandriva_com_br>
Summary : Data package with per-exon and per-gene read counts of RNA-seq samples of Pasilla knock-down by Brooks et al., Genome Research 2011
Description :
This package provides per-exon and per-gene read counts computed for
selected genes from RNA-seq data that were presented in the article
\"Conservation of an RNA regulatory map between Drosophila and mammals\" by
Brooks AN, Yang L, Duff MO, Hansen KD, Park JW, Dudoit S, Brenner SE,
Graveley BR, Genome Res. 2011 Feb;21(2):193-202, Epub 2010 Oct 4, PMID:
20921232. The experiment studied the effect of RNAi knockdown of Pasilla,
the Drosophila melanogaster ortholog of mammalian NOVA1 and NOVA2, on the
transcriptome. The package vignette describes how the data provided here
were derived from the RNA-Seq read sequence data that is provided by NCBI
Gene Expression Omnibus under accession numbers GSM461176 to GSM461181

RPM found in directory: /vol/rzm6/linux-mandriva/devel/cooker/i586/media/contrib/release

Content of RPM  Changelog  Provides Requires

Download
ftp.icm.edu.pl  R-pasilla-0.2.11-1-mdv2012.0.i586.rpm
     Search for other platforms
R-pasilla-0.2.11-1-mdv2012.0.sparc.rpm
R-pasilla-0.2.11-1-mdv2012.0.alpha.rpm
R-pasilla-0.2.11-1-mdv2012.0.ppc.rpm
R-pasilla-0.2.11-1-mdv2012.0.ia64.rpm
R-pasilla-0.2.11-1-mdv2012.0.s390.rpm

Provides :
R-pasilla

Requires :
R-DEXSeq
R-DESeq
R-locfit
R-edgeR
R-xtable
rpmlib(PayloadIsXz) <= 5.2-1


Content of RPM :
/usr/lib/R/library/pasilla
/usr/lib/R/library/pasilla/DESCRIPTION
/usr/lib/R/library/pasilla/INDEX
/usr/lib/R/library/pasilla/Meta
/usr/lib/R/library/pasilla/Meta/Rd.rds
/usr/lib/R/library/pasilla/Meta/data.rds
/usr/lib/R/library/pasilla/Meta/hsearch.rds
/usr/lib/R/library/pasilla/Meta/links.rds
/usr/lib/R/library/pasilla/Meta/nsInfo.rds
/usr/lib/R/library/pasilla/Meta/package.rds
/usr/lib/R/library/pasilla/Meta/vignette.rds
/usr/lib/R/library/pasilla/NAMESPACE
/usr/lib/R/library/pasilla/data
/usr/lib/R/library/pasilla/data/pasillaExons.RData
/usr/lib/R/library/pasilla/data/pasillaGenes.RData
/usr/lib/R/library/pasilla/doc
/usr/lib/R/library/pasilla/doc/create_objects.R
/usr/lib/R/library/pasilla/doc/create_objects.Rnw
/usr/lib/R/library/pasilla/doc/create_objects.pdf
/usr/lib/R/library/pasilla/doc/index.html
/usr/lib/R/library/pasilla/doc/library.bib
/usr/lib/R/library/pasilla/extdata
/usr/lib/R/library/pasilla/extdata/Dmel.BDGP5.25.62.DEXSeq.chr.gff
/usr/lib/R/library/pasilla/extdata/geneIDsinsubset.txt
/usr/lib/R/library/pasilla/extdata/pasilla_gene_counts.tsv
/usr/lib/R/library/pasilla/extdata/treated1fb.txt
/usr/lib/R/library/pasilla/extdata/treated2fb.txt
/usr/lib/R/library/pasilla/extdata/treated3fb.txt
/usr/lib/R/library/pasilla/extdata/untreated1fb.txt
/usr/lib/R/library/pasilla/extdata/untreated2fb.txt
There is 12 files more in these RPM.

 
ICM