| Name : R-cran-aaMI
| |
| Version : 1.0.1
| Vendor : Mandriva
|
| Release : 4mdv2009.0
| Date : 2008-08-01 22:42:38
|
| Group : Sciences/Mathematics
| Source RPM : R-cran-aaMI-1.0.1-4mdv2009.0.src.rpm
|
| Size : 0.04 MB
| |
| Packager : Thierry Vignaud < tvignaud_mandriva_com>
| |
| Summary : Mutual information for protein sequence alignments for R
|
Description :
This package contains five functions. read.FASTA reads in a FASTA-format
alignment file and parses it into a data frame. read.CX reads in a
ClustalX .aln-format file and parses it into a data frame. read.Gdoc reads
in a GeneDoc .msf-format file and parses it into a data frame.The alignment
data frame returned by each of these functions has the sequence IDs as the
row names and each site in the alignment is a column in the data frame.The
program aaMI calculates the mutual information between each pair of sites
(columns) in the protein sequence alignment data frame.The program aaMIn
calculates the normalized mutual information between pairs of sites in the
protein sequence alignment data frame. The normalized mutual information
of sites i and j is the mutual information of these sites divided by their
joint entropy.
|
RPM found in directory: /vol/rzm6/linux-mandriva/official/2009.1/i586/media/contrib/release |
