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bowtie2 rpm build for : CentOS 6. For other distributions click bowtie2.

Name : bowtie2
Version : 2.1.0 Vendor : obs://build_opensuse_org/home:halocaridina
Release : 3.1 Date : 2013-08-31 22:57:46
Group : Other Source RPM : bowtie2-2.1.0-3.1.src.rpm
Size : 2.35 MB
Packager : (none)
Summary : Fast and sensitive read alignment
Description :
Bowtie 2 is an ultrafast and memory-efficient tool for aligning sequencing reads to
long reference sequences. It is particularly good at aligning reads of about 50 up
to 100s or 1,000s of characters, and particularly good at aligning to relatively long
(e.g. mammalian) genomes. Bowtie 2 indexes the genome with an FM Index to keep its
memory footprint small: for the human genome, its memory footprint is typically
around 3.2 GB. Bowtie 2 supports gapped, local, and paired-end alignment modes.

RPM found in directory: /packages/linux-pbone/ftp5.gwdg.de/pub/opensuse/repositories/home:/halocaridina/CentOS_CentOS-6/i686

Content of RPM  Changelog  Provides Requires

Hmm ... It's impossible ;-) This RPM doesn't exist on any FTP server

Provides :
bowtie2
bowtie2(x86-32)

Requires :
perl(Getopt::Long)
perl(FindBin)
libstdc++.so.6(GLIBCXX_3.4)
libpthread.so.0(GLIBC_2.2)
libpthread.so.0
perl(POSIX)
perl(File::Spec)
perl(Config)
/usr/bin/env
rtld(GNU_HASH)
libgcc_s.so.1(GLIBC_2.0)
/usr/bin/perl
libm.so.6
libstdc++.so.6(GLIBCXX_3.4.9)
perl(warnings)
libgcc_s.so.1
libc.so.6(GLIBC_2.1.3)
rpmlib(PayloadIsXz) <= 5.2-1
libpthread.so.0(GLIBC_2.1)
libc.so.6(GLIBC_2.2)
libc.so.6(GLIBC_2.0)
/bin/sh
libpthread.so.0(GLIBC_2.0)
rpmlib(PayloadFilesHavePrefix) <= 4.0-1
libm.so.6(GLIBC_2.0)
libstdc++.so.6
rpmlib(CompressedFileNames) <= 3.0.4-1
rpmlib(FileDigests) <= 4.6.0-1
libc.so.6(GLIBC_2.1)
libstdc++.so.6(GLIBCXX_3.4.11)
libgcc_s.so.1(GCC_3.0)
libstdc++.so.6(CXXABI_1.3)
libc.so.6
perl(strict)


Content of RPM :
/usr/bin/bowtie2
/usr/bin/bowtie2-align
/usr/bin/bowtie2-build
/usr/bin/bowtie2-inspect
/usr/share/bowtie2
/usr/share/bowtie2/scripts
/usr/share/bowtie2/scripts/convert_quals.pl
/usr/share/bowtie2/scripts/gen_2b_occ_lookup.pl
/usr/share/bowtie2/scripts/gen_occ_lookup.pl
/usr/share/bowtie2/scripts/gen_solqual_lookup.pl
/usr/share/bowtie2/scripts/infer_fraglen.pl
/usr/share/bowtie2/scripts/make_a_thaliana_tair.sh
/usr/share/bowtie2/scripts/make_b_taurus_UMD3.sh
/usr/share/bowtie2/scripts/make_c_elegans.sh
/usr/share/bowtie2/scripts/make_canFam2.sh
/usr/share/bowtie2/scripts/make_d_melanogaster.sh
/usr/share/bowtie2/scripts/make_e_coli.sh
/usr/share/bowtie2/scripts/make_h_sapiens_ncbi36.sh
/usr/share/bowtie2/scripts/make_h_sapiens_ncbi37.sh
/usr/share/bowtie2/scripts/make_hg18.sh
/usr/share/bowtie2/scripts/make_hg19.sh
/usr/share/bowtie2/scripts/make_m_musculus_ncbi37.sh
/usr/share/bowtie2/scripts/make_mm10.sh
/usr/share/bowtie2/scripts/make_mm9.sh
/usr/share/bowtie2/scripts/make_rn4.sh
/usr/share/bowtie2/scripts/make_s_cerevisiae.sh
/usr/share/doc/bowtie2-2.1.0
/usr/share/doc/bowtie2-2.1.0/AUTHORS
/usr/share/doc/bowtie2-2.1.0/MANUAL
/usr/share/doc/bowtie2-2.1.0/MANUAL.markdown
There is 7 files more in these RPM.

 
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