SEARCH
NEW RPMS
DIRECTORIES
ABOUT
FAQ
VARIOUS
BLOG

 
 

fastx_toolkit rpm build for : CentOS 6. For other distributions click fastx_toolkit.

Name : fastx_toolkit
Version : 0.0.13.2 Vendor : obs://build_opensuse_org/home:halocaridina
Release : 17.4 Date : 2018-07-04 04:08:59
Group : Other Source RPM : fastx_toolkit-0.0.13.2-17.4.src.rpm
Size : 0.32 MB
Packager : (none)
Summary : Tools to process short-reads FASTA/FASTQ files
Description :

The FASTX-Toolkit is a collection of command line tools for
Short-Reads FASTA/FASTQ files preprocessing.

Next-Generation sequencing machines usually produce FASTA or FASTQ
files, containing multiple short-reads sequences (possibly with
quality information).

The main processing of such FASTA/FASTQ files is mapping (aka
aligning) the sequences to reference genomes or other databases using
specialized programs. Example of such mapping programs are: Blat,
SHRiMP, LastZ, MAQ and many many others.

However, It is sometimes more productive to preprocess the FASTA/FASTQ
files before mapping the sequences to the genome - manipulating the
sequences to produce better mapping results.

RPM found in directory: /packages/linux-pbone/ftp5.gwdg.de/pub/opensuse/repositories/home:/halocaridina/CentOS_CentOS-6/i686

Content of RPM  Changelog  Provides Requires

Hmm ... It's impossible ;-) This RPM doesn't exist on any FTP server

Provides :
fastx_toolkit
fastx_toolkit(x86-32)

Requires :
perl(Getopt::Long)
perl(GD::Graph::bars)
libstdc++.so.6(GLIBCXX_3.4)
/usr/bin/env
rtld(GNU_HASH)
/usr/bin/perl
libm.so.6
libstdc++.so.6(GLIBCXX_3.4.9)
gnuplot
libc.so.6(GLIBC_2.4)
perl(warnings)
perl(IO::Handle)
libgtextutils-0.6.1.so.0
perl(PerlIO::gzip)
perl(Carp)
libgcc_s.so.1
sed
libc.so.6(GLIBC_2.1.3)
rpmlib(PayloadIsXz) <= 5.2-1
perl(Data::Dumper)
libc.so.6(GLIBC_2.0)
libstdc++.so.6(GLIBCXX_3.4.10)
rpmlib(PayloadFilesHavePrefix) <= 4.0-1
libm.so.6(GLIBC_2.0)
libstdc++.so.6
rpmlib(CompressedFileNames) <= 3.0.4-1
rpmlib(FileDigests) <= 4.6.0-1
libc.so.6(GLIBC_2.1)
libstdc++.so.6(GLIBCXX_3.4.11)
libgcc_s.so.1(GCC_3.0)
libstdc++.so.6(CXXABI_1.3)
libc.so.6
perl(strict)
libc.so.6(GLIBC_2.3.4)


Content of RPM :
/usr/bin/fasta_clipping_histogram.pl
/usr/bin/fasta_formatter
/usr/bin/fasta_nucleotide_changer
/usr/bin/fastq_masker
/usr/bin/fastq_quality_boxplot_graph.sh
/usr/bin/fastq_quality_converter
/usr/bin/fastq_quality_filter
/usr/bin/fastq_quality_trimmer
/usr/bin/fastq_to_fasta
/usr/bin/fastx_artifacts_filter
/usr/bin/fastx_barcode_splitter.pl
/usr/bin/fastx_clipper
/usr/bin/fastx_collapser
/usr/bin/fastx_nucleotide_distribution_graph.sh
/usr/bin/fastx_nucleotide_distribution_line_graph.sh
/usr/bin/fastx_quality_stats
/usr/bin/fastx_renamer
/usr/bin/fastx_reverse_complement
/usr/bin/fastx_trimmer
/usr/bin/fastx_uncollapser
/usr/share/doc/fastx_toolkit-0.0.13.2
/usr/share/doc/fastx_toolkit-0.0.13.2/AUTHORS
/usr/share/doc/fastx_toolkit-0.0.13.2/COPYING
/usr/share/doc/fastx_toolkit-0.0.13.2/NEWS
/usr/share/doc/fastx_toolkit-0.0.13.2/README
/usr/share/doc/fastx_toolkit-0.0.13.2/THANKS

 
ICM