| Name : cd-hit
| |
| Version : 4.6.1
| Vendor : obs://build_opensuse_org/home:halocaridina
|
| Release : 2.4
| Date : 2018-07-04 04:20:43
|
| Group : Other
| Source RPM : cd-hit-4.6.1-2.4.src.rpm
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| Size : 1.20 MB
| |
| Packager : (none)
| |
| Summary : CD-HIT stands for Cluster Database at High Identity with Tolerance
|
Description :
CD-HIT stands for Cluster Database at High Identity with Tolerance. The program (cd-hit) takes a fasta format sequence database as
input and produces a set of \'non-redundant\' (nr) representative sequences as output. In addition cd-hit outputs a cluster file, documenting
the sequence \'groupies\' for each nr sequence representative. The idea is to reduce the overall size of the database without removing any
sequence information by only removing \'redundant\' (or highly similar) sequences. This is why the resulting database is called non-redundant
(nr). Essentially, cd-hit produces a set of closely related protein families from a given fasta sequence database.
CD-HIT uses a \'longest sequence first\' list removal algorithm to remove sequences above a certain identity threshold. Additionally the algorithm
implements a very fast heuristic to find high identity segments between sequences, and so can avoid many costly full alignments.
With recent developments, cd-hit package offers new programs for DNA sequence clustering and comparing two databases. It also has lots of new
options for clustering control.
CD-HIT was originally written by Weizhong Li.
|
RPM found in directory: /packages/linux-pbone/ftp5.gwdg.de/pub/opensuse/repositories/home:/halocaridina/CentOS_CentOS-6/x86_64 |
Hmm ... It's impossible ;-) This RPM doesn't exist on any FTP server
Provides :
cd-hit
cd-hit(x86-64)
Requires :
