| Name : maq
| |
| Version : 0.7.1
| Vendor : obs://build_opensuse_org/home:halocaridina
|
| Release : 7.4
| Date : 2018-07-04 04:20:22
|
| Group : Productivity/Scientific/Other
| Source RPM : maq-0.7.1-7.4.src.rpm
|
| Size : 0.49 MB
| |
| Packager : (none)
| |
| Summary : Building mapping assemblies from short reads generated by next-gen sequencers
|
Description :
Maq is a software that builds mapping assemblies from short reads generated by the
next-generation sequencing machines. It is particularly designed for Illumina-Solexa
1G Genetic Analyzer, and has preliminary functions to handle ABI SOLiD data.
Maq first aligns reads to reference sequences and then calls the consensus.
At the mapping stage, maq performs ungapped alignment. For single-end reads, maq is able
to find all hits with up to 2 or 3 mismatches, depending on a command-line option;
for paired-end reads, it always finds all paired hits with one of the two reads containing
up to 1 mismatch. At the assembling stage, maq calls the consensus based on a statistical model.
It calls the base which maximizes the posterior probability and calculates a phred quality
at each position along the consensus. Heterozygotes are also called in this process.
|
RPM found in directory: /packages/linux-pbone/ftp5.gwdg.de/pub/opensuse/repositories/home:/halocaridina/CentOS_CentOS-6/x86_64 |
Hmm ... It's impossible ;-) This RPM doesn't exist on any FTP server
Provides :
maq
maq(x86-64)
Requires :
