SEARCH
NEW RPMS
DIRECTORIES
ABOUT
FAQ
VARIOUS
BLOG

 
 

samtools rpm build for : CentOS 6. For other distributions click samtools.

Name : samtools
Version : 0.2.0_rc11 Vendor : obs://build_opensuse_org/home:peralta_jm:bioinformatics
Release : 8.3 Date : 2018-07-04 05:32:05
Group : Scientific/Bioinformatics Source RPM : samtools-0.2.0_rc11-8.3.src.rpm
Size : 1.17 MB
Packager : (none)
Summary : Tools for handling high-throughput sequencing data
Description :
SAM (Sequence Alignment/Map) is a flexible generic format for storing
nucleotide sequence alignment. SAM tools provide efficient utilities on
manipulating alignments in the SAM format.

RPM found in directory: /packages/linux-pbone/ftp5.gwdg.de/pub/opensuse/repositories/home:/peralta_jm:/bioinformatics/CentOS_CentOS-6/x86_64

Content of RPM  Changelog  Provides Requires

Hmm ... It's impossible ;-) This RPM doesn't exist on any FTP server

Provides :
samtools
samtools(x86-64)

Requires :
perl(Getopt::Long)
libc.so.6()(64bit)
perl(File::Spec)
perl(Digest::MD5)
/usr/bin/env
rtld(GNU_HASH)
libz.so.1(ZLIB_1.2.0.2)(64bit)
/usr/bin/perl
libm.so.6(GLIBC_2.2.5)(64bit)
libncurses.so.5()(64bit)
perl(warnings)
perl(IO::Handle)
perl(constant)
perl(Carp)
libpthread.so.0(GLIBC_2.3.2)(64bit)
/usr/bin/python
rpmlib(PayloadIsXz) <= 5.2-1
perl(Data::Dumper)
libc.so.6(GLIBC_2.2.5)(64bit)
libc.so.6(GLIBC_2.3.4)(64bit)
perl(Getopt::Std)
perl(File::Temp)
rpmlib(PayloadFilesHavePrefix) <= 4.0-1
libtinfo.so.5()(64bit)
libpthread.so.0(GLIBC_2.2.5)(64bit)
libpthread.so.0()(64bit)
perl(File::Path)
perl(File::Spec::Functions)
rpmlib(FileDigests) <= 4.6.0-1
rpmlib(CompressedFileNames) <= 3.0.4-1
perl(List::Util)
libc.so.6(GLIBC_2.7)(64bit)
libc.so.6(GLIBC_2.4)(64bit)
libz.so.1(ZLIB_1.2.0)(64bit)
perl(File::Find)
libm.so.6()(64bit)
libc.so.6(GLIBC_2.3)(64bit)
/sbin/ldconfig
perl(strict)
libz.so.1()(64bit)
libhts0 = 0.2.0_rc11-8.3


Content of RPM :
/usr/bin/ace2sam
/usr/bin/blast2sam.pl
/usr/bin/bowtie2sam.pl
/usr/bin/export2sam.pl
/usr/bin/interpolate_sam.pl
/usr/bin/maq2sam-long
/usr/bin/maq2sam-short
/usr/bin/md5fa
/usr/bin/md5sum-lite
/usr/bin/novo2sam.pl
/usr/bin/plot-bamstats
/usr/bin/psl2sam.pl
/usr/bin/sam2vcf.pl
/usr/bin/samtools
/usr/bin/samtools.pl
/usr/bin/seq_cache_populate.pl
/usr/bin/soap2sam.pl
/usr/bin/varfilter.py
/usr/bin/wgsim
/usr/bin/wgsim_eval.pl
/usr/bin/zoom2sam.pl
/usr/share/doc/samtools-0.2.0_rc11
/usr/share/doc/samtools-0.2.0_rc11/AUTHORS
/usr/share/doc/samtools-0.2.0_rc11/COPYING
/usr/share/doc/samtools-0.2.0_rc11/ChangeLog
/usr/share/doc/samtools-0.2.0_rc11/NEWS
/usr/share/man/man1/samtools.1.gz
/usr/share/samtools
/usr/share/samtools/00README.txt
/usr/share/samtools/ex1.fa
There is 3 files more in these RPM.

 
ICM