SEARCH
NEW RPMS
DIRECTORIES
ABOUT
FAQ
VARIOUS
BLOG

 
 

vcflib rpm build for : OpenSuSE 13.X. For other distributions click vcflib.

Name : vcflib
Version : 586c5ae5d5 Vendor : obs://build_opensuse_org/home:peralta_jm
Release : 3.1 Date : 2014-11-12 09:51:07
Group : Scientific/Bioinformatics Source RPM : vcflib-586c5ae5d5-3.1.src.rpm
Size : 25.11 MB
Packager : (none)
Summary : A C++ library for parsing and manipulating VCF files
Description :
The Variant Call Format (VCF) is a flat-file, tab-delimited textual format
intended to concisely describe reference-indexed variations between
individuals. VCF provides a common interchange format for the description of
variation in individuals and populations of samples, and has become the
defacto standard reporting format for a wide array of genomic variant detectors.

vcflib provides methods to manipulate and interpret sequence variation as it
can be described by VCF. It is both:

- an API for parsing and operating on records of genomic variation as it can be
described by the VCF format,

- and a collection of command-line utilities for executing complex
manipulations on VCF files.

The API itself provides a quick and extremely permissive method to read and
write VCF files. Extensions and applications of the library provided in the
included utilities (*.cpp) comprise the vast bulk of the library\'s utility
for most users.

RPM found in directory: /packages/linux-pbone/ftp5.gwdg.de/pub/opensuse/repositories/home:/peralta_jm:/bioinformatics/openSUSE_13.2/x86_64

Content of RPM  Changelog  Provides Requires

Hmm ... It's impossible ;-) This RPM doesn't exist on any FTP server

Provides :
vcflib
vcflib(x86-64)

Requires :
/bin/bash
/sbin/ldconfig
/sbin/ldconfig
/usr/bin/Rscript
/usr/bin/perl
/usr/bin/python
libc.so.6()(64bit)
libc.so.6(GLIBC_2.14)(64bit)
libc.so.6(GLIBC_2.2.5)(64bit)
libc.so.6(GLIBC_2.3)(64bit)
libc.so.6(GLIBC_2.7)(64bit)
libgcc_s.so.1()(64bit)
libgcc_s.so.1(GCC_3.0)(64bit)
libm.so.6()(64bit)
libm.so.6(GLIBC_2.2.5)(64bit)
libstdc++.so.6()(64bit)
libstdc++.so.6(CXXABI_1.3)(64bit)
libstdc++.so.6(CXXABI_1.3.1)(64bit)
libstdc++.so.6(GLIBCXX_3.4)(64bit)
libstdc++.so.6(GLIBCXX_3.4.11)(64bit)
libstdc++.so.6(GLIBCXX_3.4.15)(64bit)
libstdc++.so.6(GLIBCXX_3.4.9)(64bit)
libz.so.1()(64bit)
rpmlib(CompressedFileNames) <= 3.0.4-1
rpmlib(PayloadFilesHavePrefix) <= 4.0-1
rpmlib(PayloadIsLzma) <= 4.4.6-1


Content of RPM :
/usr/bin/plot_roc.r
/usr/bin/vcf2fasta
/usr/bin/vcf2sqlite.py
/usr/bin/vcf2tsv
/usr/bin/vcf_strip_extra_headers
/usr/bin/vcfaddinfo
/usr/bin/vcfafpath
/usr/bin/vcfallelicprimitives
/usr/bin/vcfaltcount
/usr/bin/vcfannotate
/usr/bin/vcfannotategenotypes
/usr/bin/vcfbiallelic
/usr/bin/vcfbreakmulti
/usr/bin/vcfcat
/usr/bin/vcfcheck
/usr/bin/vcfclassify
/usr/bin/vcfcleancomplex
/usr/bin/vcfclearid
/usr/bin/vcfclearinfo
/usr/bin/vcfcombine
/usr/bin/vcfcommonsamples
/usr/bin/vcfcomplex
/usr/bin/vcfcountalleles
/usr/bin/vcfcreatemulti
/usr/bin/vcfdistance
/usr/bin/vcfecho
/usr/bin/vcfentropy
/usr/bin/vcfevenregions
/usr/bin/vcffilter
/usr/bin/vcffixup
There is 66 files more in these RPM.

 
ICM