| Name : python3-probeinterface
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| Version : 0.2.17
| Vendor : Fedora Project
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| Release : 1.fc37
| Date : 2023-06-27 21:50:26
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| Group : Unspecified
| Source RPM : python-probeinterface-0.2.17-1.fc37.src.rpm
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| Size : 0.41 MB
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| Packager : Fedora Project
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| Summary : Handles probe layout, geometry, and wiring to device
|
Description :
A Python package to handle the layout, geometry, and wiring of silicon probes
for extracellular electrophysiology experiments.
Goals
Make a lightweight package to handle:
• probe contact geometry (both 2D and 3D layouts)
• probe shape (contour of the probe, shape of channel contact, …)
• probe wiring to device (the physical layout often doesn’t match the channel
ordering)
• combining several probes into a device with global geometry + global wiring
• exporting probe geometry data into JSON files
• loading existing probe geometry files (Neuronexus, imec, Cambridge
Neurotech…) Started here
Bonus:
• optional plotting (based on matplotlib)
• load/save geometry using common formats (PRB, CSV, NWB, …)
• handle SI length units correctly um/mm/…
Target users/project:
• spikeinterface team: integrate this into spikeextractor for channel
location
• neo team: handle array_annotations for AnalogSignal
• spikeforest team: use this package for plotting probe activity
• phy team: integrate for probe display
• spyking-circus team: handle probe with this package
• kilosort team: handle probe with this package
• tridesclous team: handle probe with this package
• open ephys team: automatically generate channel map configuration files
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RPM found in directory: /packages/linux-pbone/archive.fedoraproject.org/fedora/linux/updates/37/Everything/x86_64/Packages/p |
