| Name : R-TreeDist
| |
| Version : 2.9.1
| Vendor : obs://build_opensuse_org/devel:languages:R
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| Release : lp154.1.1
| Date : 2024-09-10 20:19:28
|
| Group : Development/Libraries/Other
| Source RPM : R-TreeDist-2.9.1-lp154.1.1.src.rpm
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| Size : 2.04 MB
| |
| Packager : https://www_suse_com/
| |
| Summary : Calculate and Map Distances Between Phylogenetic Trees
|
Description :
Implements measures of tree similarity, including information-based
generalized Robinson-Foulds distances (Phylogenetic Information
Distance, Clustering Information Distance, Matching Split Information
Distance; Smith 2020) < doi:10.1093/bioinformatics/btaa614>
Jaccard-Robinson-Foulds distances (Bocker et al. 2013)
< doi:10.1007/978-3-642-40453-5_13>, including the Nye et al. (2006)
metric < doi:10.1093/bioinformatics/bti720> the Matching Split Distance
(Bogdanowicz & Giaro 2012) < doi:10.1109/TCBB.2011.48> Maximum
Agreement Subtree distances; the Kendall-Colijn (2016) distance
< doi:10.1093/molbev/msw124>, and the Nearest Neighbour Interchange
(NNI) distance, approximated per Li et al. (1996)
< doi:10.1007/3-540-61332-3_168>. Includes tools for visualizing
mappings of tree space (Smith 2022) < doi:10.1093/sysbio/syab100>, for
identifying islands of trees (Silva and Wilkinson 2021)
< doi:10.1093/sysbio/syab015>, for calculating the median of sets of
trees, and for computing the information content of trees and splits.
|
RPM found in directory: /packages/linux-pbone/ftp5.gwdg.de/pub/opensuse/repositories/devel:/languages:/R:/autoCRAN/15.4/x86_64 |
