| Name : R-permubiome
| |
| Version : 1.3.2
| Vendor : obs://build_opensuse_org/devel:languages:R
|
| Release : lp154.2.1
| Date : 2024-06-08 17:22:16
|
| Group : Development/Libraries/Other
| Source RPM : R-permubiome-1.3.2-lp154.2.1.src.rpm
|
| Size : 0.06 MB
| |
| Packager : https://www_suse_com/
| |
| Summary : A Permutation Based Test for Biomarker Discovery in Microbiome Data
|
Description :
The permubiome R package was created to perform a permutation-based
non-parametric analysis on microbiome data for biomarker discovery
aims. This test executes thousands of comparisons in a pairwise manner,
after a random shuffling of data into the different groups of study
with a prior selection of the microbiome features with the largest
variation among groups. Previous to the permutation test itself, data
can be normalized according to different methods proposed to handle
microbiome data (\'proportions\' or \'Anders\'). The median-based
differences between groups resulting from the multiple simulations are
fitted to a normal distribution with the aim to calculate their
significance. A multiple testing correction based on Benjamini-Hochberg
method (fdr) is finally applied to extract the differentially presented
features between groups of your dataset. LATEST UPDATES: v1.1 and
olders incorporates function to parse COLUMN format; v1.2 and olders
incorporates -optimize- function to maximize evaluation of features
with largest inter-class variation; v1.3 and olders includes the
-size.effect- function to perform estimation statistics using the
bootstrap-coupled approach implemented in the \'dabestr\' (>=0.3.0) R
package. Current v1.3.2 fixed bug with \"Class\" recognition and updated
\'dabestr\' functions.
|
RPM found in directory: /packages/linux-pbone/ftp5.gwdg.de/pub/opensuse/repositories/devel:/languages:/R:/autoCRAN/15.4/x86_64 |
