| Name : R-phase
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| Version : 1.2.9
| Vendor : obs://build_opensuse_org/devel:languages:R
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| Release : lp154.6.1
| Date : 2024-07-31 13:10:08
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| Group : Development/Libraries/Other
| Source RPM : R-phase-1.2.9-lp154.6.1.src.rpm
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| Size : 0.45 MB
| |
| Packager : https://www_suse_com/
| |
| Summary : Analyse Biological Time-Series Data
|
Description :
Compiles functions to trim, bin, visualise, and analyse activity/sleep
time-series data collected from the Drosophila Activity Monitor (DAM)
system (Trikinetics, USA). The following methods were used to compute
periodograms - Chi-square periodogram: Sokolove and Bushell (1978)
< doi:10.1016/0022-5193(78)90022-X>, Lomb-Scargle periodogram: Lomb
(1976) < doi:10.1007/BF00648343>, Scargle (1982) < doi:10.1086/160554>
and Ruf (1999) < doi:10.1076/brhm.30.2.178.1422>, and Autocorrelation:
Eijzenbach et al. (1986) < doi:10.1111/j.1440-1681.1986.tb00943.x>.
Identification of activity peaks is done after using a Savitzky-Golay
filter (Savitzky and Golay (1964) < doi:10.1021/ac60214a047>) to smooth
raw activity data. Three methods to estimate anticipation of activity
are used based on the following papers - Slope method: Fernandez et al.
(2020) < doi:10.1016/j.cub.2020.04.025>, Harrisingh method: Harrisingh
et al. (2007) < doi:10.1523/JNEUROSCI.3680-07.2007>, and Stoleru method:
Stoleru et al. (2004) < doi:10.1038/nature02926>. Rose plots and
circular analysis are based on methods from - Batschelet (1981)
< ISBN:0120810506> and Zar (2010) < ISBN:0321656865>.
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RPM found in directory: /packages/linux-pbone/ftp5.gwdg.de/pub/opensuse/repositories/devel:/languages:/R:/autoCRAN/15.4/x86_64 |
