| Name : R-CREAM
| |
| Version : 1.1.1
| Vendor : obs://build_opensuse_org/devel:languages:R
|
| Release : lp155.2.1
| Date : 2023-09-05 18:11:22
|
| Group : Development/Libraries/Other
| Source RPM : R-CREAM-1.1.1-lp155.2.1.src.rpm
|
| Size : 0.08 MB
| |
| Packager : https://www_suse_com/
| |
| Summary : Clustering of Genomic Regions Analysis Method
|
Description :
Provides a new method for identification of clusters of genomic regions
within chromosomes. Primarily, it is used for calling clusters of
cis-regulatory elements (COREs). \'CREAM\' uses genome-wide maps of
genomic regions in the tissue or cell type of interest, such as those
generated from chromatin-based assays including DNaseI, ATAC or
ChIP-Seq. \'CREAM\' considers proximity of the elements within
chromosomes of a given sample to identify COREs in the following steps:
1) It identifies window size or the maximum allowed distance between
the elements within each CORE, 2) It identifies number of elements
which should be clustered as a CORE, 3) It calls COREs, 4) It filters
the COREs with lowest order which does not pass the threshold
considered in the approach.
|
RPM found in directory: /packages/linux-pbone/ftp5.gwdg.de/pub/opensuse/repositories/devel:/languages:/R:/autoCRAN/15.5/x86_64 |
