| Name : R-GHap
| |
| Version : 3.0.0
| Vendor : obs://build_opensuse_org/devel:languages:R
|
| Release : lp155.9.1
| Date : 2024-06-20 15:36:08
|
| Group : Development/Libraries/Other
| Source RPM : R-GHap-3.0.0-lp155.9.1.src.rpm
|
| Size : 1.01 MB
| |
| Packager : https://www_suse_com/
| |
| Summary : Genome-Wide Haplotyping
|
Description :
Haplotype calling from phased marker data. Given user-defined haplotype
blocks (HapBlock), the package identifies the different haplotype
alleles (HapAllele) present in the data and scores sample haplotype
allele genotypes (HapGenotype) based on HapAllele dose (i.e. 0, 1 or 2
copies). The output is not only useful for analyses that can handle
multi-allelic markers, but is also conveniently formatted for existing
pipelines intended for bi-allelic markers. The package was first
described in Bioinformatics by Utsunomiya et al. (2016,
< doi:10.1093/bioinformatics/btw356>). Since the v2 release, the package
provides functions for unsupervised and supervised detection of
ancestry tracks. The methods implemented in these functions were
described in an article published in Methods in Ecology and Evolution
by Utsunomiya et al. (2020, < doi:10.1111/2041-210X.13467>). The source
code for v3 was modified for improved performance and inclusion of new
functionality, including analysis of unphased data, runs of
homozygosity, sampling methods for virtual gamete mating, mixed model
fitting and GWAS.
|
RPM found in directory: /packages/linux-pbone/ftp5.gwdg.de/pub/opensuse/repositories/devel:/languages:/R:/autoCRAN/15.5/x86_64 |
