| Name : R-TreeSimGM
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| Version : 2.5
| Vendor : obs://build_opensuse_org/devel:languages:R
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| Release : lp155.18.1
| Date : 2024-06-14 10:48:03
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| Group : Development/Libraries/Other
| Source RPM : R-TreeSimGM-2.5-lp155.18.1.src.rpm
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| Size : 0.22 MB
| |
| Packager : https://www_suse_com/
| |
| Summary : Simulating Phylogenetic Trees under General Bellman Harris and Lineage Shift Model
|
Description :
Provides a flexible simulation tool for phylogenetic trees under a
general model for speciation and extinction. Trees with a
user-specified number of extant tips, or a user-specified stem age are
simulated. It is possible to assume any probability distribution for
the waiting time until speciation and extinction. Furthermore, the
waiting times to speciation / extinction may be scaled in different
parts of the tree, meaning we can simulate trees with clade-dependent
diversification processes. At a speciation event, one species splits
into two. We allow for two different modes at these splits: (i)
symmetric, where for every speciation event new waiting times until
speciation and extinction are drawn for both daughter lineages; and
(ii) asymmetric, where a speciation event results in one species with
new waiting times, and another that carries the extinction time and age
of its ancestor. The symmetric mode can be seen as an vicariant or
allopatric process where divided populations suffer equal evolutionary
forces while the asymmetric mode could be seen as a peripatric
speciation where a mother lineage continues to exist. Reference: O.
Hagen and T. Stadler (2017). TreeSimGM: Simulating phylogenetic trees
under general Bellman Harris models with lineage-specific shifts of
speciation and extinction in R. Methods in Ecology and Evolution.
< doi:10.1111/2041-210X.12917>.
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RPM found in directory: /packages/linux-pbone/ftp5.gwdg.de/pub/opensuse/repositories/devel:/languages:/R:/autoCRAN/15.5/x86_64 |
