| Name : R-macrosyntR
| |
| Version : 0.3.3
| Vendor : obs://build_opensuse_org/devel:languages:R
|
| Release : lp156.2.1
| Date : 2024-06-24 15:35:01
|
| Group : Development/Libraries/Other
| Source RPM : R-macrosyntR-0.3.3-lp156.2.1.src.rpm
|
| Size : 3.42 MB
| |
| Packager : https://www_suse_com/
| |
| Summary : Draw Ordered Oxford Grids and Chord Diagrams
|
Description :
Use standard genomics file format (BED) and a table of orthologs to
illustrate synteny conservation at the genome-wide scale. Significantly
conserved linkage groups are identified as described in Simakov et al.
(2020) < doi:10.1038/s41559-020-1156-z> and displayed on an Oxford Grid
(Edwards (1991) < doi:10.1111/j.1469-1809.1991.tb00394.x>) or a chord
diagram as in Simakov et al. (2022) < doi:10.1126/sciadv.abi5884>. The
package provides a function that uses a network-based greedy algorithm
to find communities (Clauset et al. (2004)
< doi:10.1103/PhysRevE.70.066111>) and so automatically order the
chromosomes on the plot to improve interpretability.
|
RPM found in directory: /packages/linux-pbone/ftp5.gwdg.de/pub/opensuse/repositories/devel:/languages:/R:/autoCRAN/15.6/x86_64 |
