| Name : R-ACSNMineR
| |
| Version : 0.16.8.25
| Vendor : obs://build_opensuse_org/devel:languages:R
|
| Release : lp153.8.13
| Date : 2024-06-14 11:49:52
|
| Group : Development/Libraries/Other
| Source RPM : R-ACSNMineR-0.16.8.25-lp153.8.13.src.rpm
|
| Size : 0.18 MB
| |
| Packager : (none)
| |
| Summary : Gene Enrichment Analysis from ACSN Maps or GMT Files
|
Description :
Compute and represent gene set enrichment or depletion from your data
based on pre-saved maps from the Atlas of Cancer Signalling Networks
(ACSN) or user imported maps. User imported maps must be complying with
the GMT format as defined by the Broad Institute, that is to say that
the file should be tab- separated, that the first column should contain
the module name, the second column can contain comments that will be
overwritten with the number of genes in the module, and subsequent
columns must contain the list of genes (HUGO symbols; tab-separated)
inside the module. The gene set enrichment can be run with
hypergeometric test or Fisher exact test, and can use multiple
corrections. Visualization of data can be done either by barplots or
heatmaps.
|
RPM found in directory: /packages/linux-pbone/ftp5.gwdg.de/pub/opensuse/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Leap_15.3/x86_64 |
