| Name : R-Allspice
| |
| Version : 1.0.7
| Vendor : obs://build_opensuse_org/devel:languages:R
|
| Release : lp153.1.7
| Date : 2024-06-14 10:57:33
|
| Group : Development/Libraries/Other
| Source RPM : R-Allspice-1.0.7-lp153.1.7.src.rpm
|
| Size : 4.23 MB
| |
| Packager : (none)
| |
| Summary : RNA-Seq Profile Classifier
|
Description :
We developed a lightweight machine learning tool for RNA profiling of
acute lymphoblastic leukemia (ALL), however, it can be used for any
problem where multiple classes need to be identified from
multi-dimensional data. The methodology is described in Makinen V-P,
Rehn J, Breen J, Yeung D, White DL (2022) Multi-cohort transcriptomic
subtyping of B-cell acute lymphoblastic leukemia, International Journal
of Molecular Sciences 23:4574, < doi:10.3390/ijms23094574>. The
classifier contains optimized mean profiles of the classes (centroids)
as observed in the training data, and new samples are matched to these
centroids using the shortest Euclidean distance. Centroids derived from
a dataset of 1,598 ALL patients are included, but users can train the
models with their own data as well. The output includes both numerical
and visual presentations of the classification results. Samples with
mixed features from multiple classes or atypical values are also
identified.
|
RPM found in directory: /packages/linux-pbone/ftp5.gwdg.de/pub/opensuse/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Leap_15.3/x86_64 |
