| Name : R-BMRBr
| |
| Version : 0.2.0
| Vendor : obs://build_opensuse_org/devel:languages:R
|
| Release : lp153.12.4
| Date : 2024-06-14 11:20:53
|
| Group : Development/Libraries/Other
| Source RPM : R-BMRBr-0.2.0-lp153.12.4.src.rpm
|
| Size : 0.03 MB
| |
| Packager : (none)
| |
| Summary : \'BMRB\' File Downloader
|
Description :
Nuclear magnetic resonance (NMR) is a highly versatile analytical
technique for studying molecular configuration, conformation, and
dynamics, especially those of biomacromolecules such as proteins.
Biological Magnetic Resonance Data Bank (\'BMRB\') is a repository for
Data from NMR Spectroscopy on Proteins, Peptides, Nucleic Acids, and
other Biomolecules. Currently, \'BMRB\' offers an R package \'RBMRB\' to
fetch data, however, it doesn\'t easily offer individual data file
downloading and storing in a local directory. When using \'RBMRB\', the
data will stored as an R object, which fundamentally hinders the NMR
researches to access the rich information from raw data, for example,
the metadata. Here, \'BMRBr\' File Downloader (\'BMRBr\') offers a more
fundamental, low level downloader, which will download original
deposited .str format file. This type of file contains information such
as entry title, authors, citation, protein sequences, and so on. Many
factors affect NMR experiment outputs, such as temperature, resonance
sensitivity and etc., approximately 40% of the entries in the \'BMRB\'
have chemical shift accuracy problems [1,2] Unfortunately, current
reference correction methods are heavily dependent on the availability
of assigned protein chemical shifts or protein structure. This is my
current research project is going to solve, which will be included in
the future release of the package. The current version of the package
is sufficient and robust enough for downloading individual \'BMRB\' data
file from the \'BMRB\' database < http://www.bmrb.wisc.edu>. The
functionalities of this package includes but not limited: * To
simplifies NMR researches by combine data downloading and results
analysis together. * To allows NMR data reaches a broader audience that
could utilize more than just chemical shifts but also metadata. * To
offer reference corrected data for entries without assignment or
structure information (future release). Reference: [1] E.L. Ulrich, H.
Akutsu, J.F. Doreleijers, Y. Harano, Y.E. Ioannidis, J. Lin, et al.,
BioMagResBank, Nucl. Acids Res. 36 (2008) D402–8.
< doi:10.1093/nar/gkm957>. [2] L. Wang, H.R. Eghbalnia, A. Bahrami, J.L.
Markley, Linear analysis of carbon-13 chemical shift differences and
its application to the detection and correction of errors in
referencing and spin system identifications, J. Biomol. NMR. 32 (2005)
13–22. < doi:10.1007/s10858-005-1717-0>.
|
RPM found in directory: /packages/linux-pbone/ftp5.gwdg.de/pub/opensuse/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Leap_15.3/x86_64 |
