| Name : R-GRAPE
| |
| Version : 0.1.1
| Vendor : obs://build_opensuse_org/devel:languages:R
|
| Release : lp153.2.13
| Date : 2024-06-14 11:02:22
|
| Group : Development/Libraries/Other
| Source RPM : R-GRAPE-0.1.1-lp153.2.13.src.rpm
|
| Size : 0.04 MB
| |
| Packager : (none)
| |
| Summary : Gene-Ranking Analysis of Pathway Expression
|
Description :
Gene-Ranking Analysis of Pathway Expression (GRAPE) is a tool for
summarizing the consensus behavior of biological pathways in the form
of a template, and for quantifying the extent to which individual
samples deviate from the template. GRAPE templates are based only on
the relative rankings of the genes within the pathway and can be used
for classification of tissue types or disease subtypes. GRAPE can be
used to represent gene-expression samples as vectors of pathway scores,
where each pathway score indicates the departure from a given
collection of reference samples. The resulting pathway- space
representation can be used as the feature set for various applications,
including survival analysis and drug-response prediction. Users of
GRAPE should use the following citation: Klein MI, Stern DF, and Zhao
H. GRAPE: A pathway template method to characterize tissue-specific
functionality from gene expression profiles. BMC Bioinformatics, 18:317
(June 2017).
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RPM found in directory: /packages/linux-pbone/ftp5.gwdg.de/pub/opensuse/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Leap_15.3/x86_64 |
