| Name : R-MCMCtreeR
| |
| Version : 1.1
| Vendor : obs://build_opensuse_org/devel:languages:R
|
| Release : lp153.7.7
| Date : 2024-06-14 11:34:03
|
| Group : Development/Libraries/Other
| Source RPM : R-MCMCtreeR-1.1-lp153.7.7.src.rpm
|
| Size : 7.33 MB
| |
| Packager : (none)
| |
| Summary : Prepare MCMCtree Analyses and Plot Bayesian Divergence Time Analyses Estimates on Trees
|
Description :
Provides functions to prepare time priors for \'MCMCtree\' analyses in
the \'PAML\' software from Yang (2007)< doi:10.1093/molbev/msm088> and
plot time-scaled phylogenies from any Bayesian divergence time
analysis. Most time-calibrated node prior distributions require
user-specified parameters. The package provides functions to refine
these parameters, so that the resulting prior distributions accurately
reflect confidence in known, usually fossil, time information. These
functions also enable users to visualise distributions and write
\'MCMCtree\' ready input files. Additionally, the package supplies
flexible functions to visualise age uncertainty on a plotted tree with
using node bars, using branch widths proportional to the age
uncertainty, or by plotting the full posterior distributions on nodes.
Time-scaled phylogenetic plots can be visualised with absolute and
geological timescales . All plotting functions are applicable with
output from any Bayesian software, not just \'MCMCtree\'.
|
RPM found in directory: /packages/linux-pbone/ftp5.gwdg.de/pub/opensuse/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Leap_15.3/x86_64 |
