| Name : R-MGMS2
| |
| Version : 1.0.2
| Vendor : obs://build_opensuse_org/devel:languages:R
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| Release : lp153.3.12
| Date : 2024-06-14 11:40:51
|
| Group : Development/Libraries/Other
| Source RPM : R-MGMS2-1.0.2-lp153.3.12.src.rpm
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| Size : 4.52 MB
| |
| Packager : (none)
| |
| Summary : \'MGMS2\' for Polymicrobial Samples
|
Description :
A glycolipid mass spectrometry technology has the potential to
accurately identify individual bacterial species from polymicrobial
samples. To develop bacterial identification algorithms (e.g. machine
learning) using this glycolipid technology, it is necessary to generate
a large number of various in-silico polymicrobial mass spectra that are
similar to real mass spectra. \'MGMS2\' (Membrane Glycolipid Mass
Spectrum Simulator) generates such in-silico mass spectra, considering
errors in m/z (mass-to-charge ratio) and variances of intensity values,
occasions of missing signature ions, and noise peaks. It estimates
summary statistics of monomicrobial mass spectra for each strain or
species and simulates polymicrobial glycolipid mass spectra using the
summary statistics of monomicrobial mass spectra. References: Ryu,
S.Y., Wendt, G.A., Chandler, C.E., Ernst, R.K. and Goodlett, D.R.
(2019) < doi:10.1021/acs.analchem.9b03340> \"Model-based Spectral Library
Approach for Bacterial Identification via Membrane Glycolipids.\" Gibb,
S. and Strimmer, K. (2012) < doi:10.1093/bioinformatics/bts447>
\"MALDIquant: a versatile R package for the analysis of mass
spectrometry data.\"
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RPM found in directory: /packages/linux-pbone/ftp5.gwdg.de/pub/opensuse/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Leap_15.3/x86_64 |
