| Name : R-Meth27QC
| |
| Version : 1.1
| Vendor : obs://build_opensuse_org/devel:languages:R
|
| Release : lp153.3.12
| Date : 2024-06-14 11:41:11
|
| Group : Development/Libraries/Other
| Source RPM : R-Meth27QC-1.1-lp153.3.12.src.rpm
|
| Size : 0.18 MB
| |
| Packager : (none)
| |
| Summary : Meth27QC: sample quality analysis, and sample control analysis
|
Description :
Meth27QC is a tool for analyzing Illumina Infinium HumanMethylation27
BeadChip Data and generating QC reports. This package allows users
quickly assess data quality of the Assay. Users can evaluate the data
quality in the way that Illumina GenomeStudio/BeadStudio recommended
based on the control probes. The package reads files exported from
GenomeStudio/BeadStudio software, generating intensity and standard
deviation plots grouped by the types of the control probes. Meth27
carries 40 control probes for staining, hybridization, target removal,
extension, bisulfite conversion, specificity, negative and
non-polymorphic controls. Details of those control probes can be found
in the Infinium Assay for Methylation Protocol Guide from Illumina.We
also used the other non-control probes to plot intensity of detected
genes, signal average for green and red. Outliers can be identified.
|
RPM found in directory: /packages/linux-pbone/ftp5.gwdg.de/pub/opensuse/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Leap_15.3/x86_64 |
