| Name : R-NBBttest
| |
| Version : 1.0.1
| Vendor : obs://build_opensuse_org/devel:languages:R
|
| Release : lp153.1.9
| Date : 2024-06-14 11:40:55
|
| Group : Development/Libraries/Other
| Source RPM : R-NBBttest-1.0.1-lp153.1.9.src.rpm
|
| Size : 3.46 MB
| |
| Packager : (none)
| |
| Summary : Negative Binomial Beta t-Test
|
Description :
We constructed \'NBBttest\' for identifying genes or RNA isoforms
differentially expressed between two conditions on RNA-seq count data.
Package \'NBBttest\' can perform data quality check, data normalization,
differential analysis, annotation and graphic analysis. In differential
analysis, \'NBBttest\' can identify differentially expressed genes and
differential RNA isoforms in alternative splicing sites and alternative
polyadenylation sites, differential sgRNA, and differential CRISPR
(clustered regularly interspaced short palindromic repeats) screening
genes. In graphic analysis, \'NBBttest\' provides two types of heatmaps
to visualize differential expression at gene or isoform level using
z-score and n-score and creates pathway heatmap. \'NBBttest\' can plot
differentially expressed exons within a specified gene. In addition,
\'NBBttest\' provides a tool for annotation of genes and exons. The
methods used in \'NBBttest\' were new statistical methods developed from
Tan and others (2015) < doi:10.1371/journal.pone.0123658>. The
statistical methods are robust and very powerful in identifying genes
or RNA isoforms differentially expressed between two conditions in
small samples.
|
RPM found in directory: /packages/linux-pbone/ftp5.gwdg.de/pub/opensuse/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Leap_15.3/x86_64 |
