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R-RefFreeEWAS rpm build for : openSUSE Leap 15. For other distributions click R-RefFreeEWAS.

Name : R-RefFreeEWAS
Version : 2.2 Vendor : obs://build_opensuse_org/devel:languages:R
Release : lp153.2.13 Date : 2024-06-14 11:17:56
Group : Development/Libraries/Other Source RPM : R-RefFreeEWAS-2.2-lp153.2.13.src.rpm
Size : 3.24 MB
Packager : (none)
Summary : EWAS using Reference-Free DNA Methylation Mixture Deconvolution
Description :
Reference-free method for conducting EWAS while deconvoluting DNA
methylation arising as mixtures of cell types. The older method
(Houseman et al., 2014,< doi:10.1093/bioinformatics/btu029>) is similar
to surrogate variable analysis (SVA and ISVA), except that it makes
additional use of a biological mixture assumption. The newer method
(Houseman et al., 2016, < doi:10.1186/s12859-016-1140-4>) is similar to
non-negative matrix factorization, with additional constraints and
additional utilities.

RPM found in directory: /packages/linux-pbone/ftp5.gwdg.de/pub/opensuse/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Leap_15.3/x86_64

Content of RPM  Provides Requires

Download
ftp.icm.edu.pl  R-RefFreeEWAS-2.2-lp153.2.13.x86_64.rpm
     

Provides :
R-RefFreeEWAS
R-RefFreeEWAS(x86-64)

Requires :
R-base
R-quadprog
rpmlib(CompressedFileNames) <= 3.0.4-1
rpmlib(FileDigests) <= 4.6.0-1
rpmlib(PayloadFilesHavePrefix) <= 4.0-1
rpmlib(PayloadIsXz) <= 5.2-1


Content of RPM :
/usr/lib64/R/library/RefFreeEWAS
/usr/lib64/R/library/RefFreeEWAS/DESCRIPTION
/usr/lib64/R/library/RefFreeEWAS/INDEX
/usr/lib64/R/library/RefFreeEWAS/Meta
/usr/lib64/R/library/RefFreeEWAS/Meta/Rd.rds
/usr/lib64/R/library/RefFreeEWAS/Meta/data.rds
/usr/lib64/R/library/RefFreeEWAS/Meta/features.rds
/usr/lib64/R/library/RefFreeEWAS/Meta/hsearch.rds
/usr/lib64/R/library/RefFreeEWAS/Meta/links.rds
/usr/lib64/R/library/RefFreeEWAS/Meta/nsInfo.rds
/usr/lib64/R/library/RefFreeEWAS/Meta/package.rds
/usr/lib64/R/library/RefFreeEWAS/NAMESPACE
/usr/lib64/R/library/RefFreeEWAS/R
/usr/lib64/R/library/RefFreeEWAS/R/RefFreeEWAS
/usr/lib64/R/library/RefFreeEWAS/R/RefFreeEWAS.rdb
/usr/lib64/R/library/RefFreeEWAS/R/RefFreeEWAS.rdx
/usr/lib64/R/library/RefFreeEWAS/data
/usr/lib64/R/library/RefFreeEWAS/data/HNSCC.RData
/usr/lib64/R/library/RefFreeEWAS/data/RefFreeEWAS.RData
/usr/lib64/R/library/RefFreeEWAS/data/datalist
/usr/lib64/R/library/RefFreeEWAS/help
/usr/lib64/R/library/RefFreeEWAS/help/AnIndex
/usr/lib64/R/library/RefFreeEWAS/help/RefFreeEWAS.rdb
/usr/lib64/R/library/RefFreeEWAS/help/RefFreeEWAS.rdx
/usr/lib64/R/library/RefFreeEWAS/help/aliases.rds
/usr/lib64/R/library/RefFreeEWAS/help/paths.rds
/usr/lib64/R/library/RefFreeEWAS/html
/usr/lib64/R/library/RefFreeEWAS/html/00Index.html
/usr/lib64/R/library/RefFreeEWAS/html/R.css

 
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