| Name : R-SADEG
| |
| Version : 1.0.0
| Vendor : obs://build_opensuse_org/devel:languages:R
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| Release : lp153.2.13
| Date : 2024-06-14 11:03:33
|
| Group : Development/Libraries/Other
| Source RPM : R-SADEG-1.0.0-lp153.2.13.src.rpm
|
| Size : 0.05 MB
| |
| Packager : (none)
| |
| Summary : Stability Analysis in Differentially Expressed Genes
|
Description :
We analyzed the nucleotide composition of genes with a special emphasis
on stability of DNA sequences. Besides, in a variety of different
organisms unequal use of synonymous codons, or codon usage bias, occurs
which also show variation among genes in the same genome. Seemingly,
codon usage bias is affected by both selective constraints and mutation
bias which allows and enables us to examine and detect changes in these
two evolutionary forces between genomes or along one genome. Therefore,
we determined the codon adaptation index (CAI), effective number of
codons (ENC) and codon usage analysis with calculation of the relative
synonymous codon usage (RSCU), and subsequently predicted the
translation efficiency and accuracy through GC-rich codon usages.
Furthermore, we estimated the relative stability of the DNA sequence
following calculation of the average free energy (Delta G) and Dimer
base-stacking energy level.
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RPM found in directory: /packages/linux-pbone/ftp5.gwdg.de/pub/opensuse/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Leap_15.3/x86_64 |
