| Name : R-SCAT
| |
| Version : 0.5.0
| Vendor : obs://build_opensuse_org/devel:languages:R
|
| Release : lp153.2.13
| Date : 2024-06-14 11:03:48
|
| Group : Development/Libraries/Other
| Source RPM : R-SCAT-0.5.0-lp153.2.13.src.rpm
|
| Size : 0.17 MB
| |
| Packager : (none)
| |
| Summary : Summary Based Conditional Association Test
|
Description :
Conditional association test based on summary data from genome-wide
association study (GWAS). SCAT adjusts for heterogeneity in SNP
coverage that exists in summary data if SNPs are not present in all of
the participating studies of a GWAS meta-analysis. This commonly
happens when different reference panels are used in participating
studies for genotype imputation. This could happen when ones simply do
not have data for some SNPs (e.g. different array, or imputated data is
not available). Without properly adjusting for this kind of
heterogeneity leads to inflated false positive rate. SCAT can also be
used to conduct conventional conditional analysis when coverage
heterogeneity is absent. For more details, refer to Zhang et al. (2018)
Brief Bioinform. 19(6):1337-1343. < doi: 10.1093/bib/bbx072>.
|
RPM found in directory: /packages/linux-pbone/ftp5.gwdg.de/pub/opensuse/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Leap_15.3/x86_64 |
