| Name : R-StAMPP
| |
| Version : 1.6.3
| Vendor : obs://build_opensuse_org/devel:languages:R
|
| Release : lp153.16.2
| Date : 2024-06-14 11:57:31
|
| Group : Development/Libraries/Other
| Source RPM : R-StAMPP-1.6.3-lp153.16.2.src.rpm
|
| Size : 0.14 MB
| |
| Packager : (none)
| |
| Summary : Statistical Analysis of Mixed Ploidy Populations
|
Description :
Allows users to calculate pairwise Nei\'s Genetic Distances (Nei 1972),
pairwise Fixation Indexes (Fst) (Weir & Cockerham 1984) and also
Genomic Relationship matrixes following Yang et al. (2010) in mixed and
single ploidy populations. Bootstrapping across loci is implemented
during Fst calculation to generate confidence intervals and p-values
around pairwise Fst values. StAMPP utilises SNP genotype data of any
ploidy level (with the ability to handle missing data) and is coded to
utilise multithreading where available to allow efficient analysis of
large datasets. StAMPP is able to handle genotype data from genlight
objects allowing integration with other packages such adegenet. Please
refer to LW Pembleton, NOI Cogan & JW Forster, 2013, Molecular Ecology
Resources, 13(5), 946-952. < doi:10.1111/1755-0998.12129> for the
appropriate citation and user manual. Thank you in advance.
|
RPM found in directory: /packages/linux-pbone/ftp5.gwdg.de/pub/opensuse/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Leap_15.3/x86_64 |
