| Name : R-SubpathwayGMir
| |
| Version : 1.0
| Vendor : obs://build_opensuse_org/devel:languages:R
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| Release : lp153.3.12
| Date : 2024-06-14 11:41:53
|
| Group : Development/Libraries/Other
| Source RPM : R-SubpathwayGMir-1.0-lp153.3.12.src.rpm
|
| Size : 4.44 MB
| |
| Packager : (none)
| |
| Summary : Identify Metabolic Subpathways Mediated by MicroRNAs
|
Description :
Routines for identifying metabolic subpathways mediated by microRNAs
(miRNAs) through topologically locating miRNAs and genes within
reconstructed Kyoto Encyclopedia of Genes and Genomes (KEGG) metabolic
pathway graphs embedded by miRNAs. (1) This package can obtain the
reconstructed KEGG metabolic pathway graphs with genes and miRNAs as
nodes, through converting KEGG metabolic pathways to graphs with genes
as nodes and compounds as edges, and then integrating miRNA-target
interactions verified by low-throughput experiments from four databases
(TarBase, miRecords, mirTarBase and miR2Disease) into converted pathway
graphs. (2) This package can locate metabolic subpathways mediated by
miRNAs by topologically analyzing the \"lenient distance\" of miRNAs and
genes within reconstructed KEGG metabolic pathway graphs.(3) This
package can identify significantly enriched miRNA-mediated metabolic
subpathways based on located subpathways by hypergenomic test. (4) This
package can support six species for metabolic subpathway
identification, such as caenorhabditis elegans, drosophila
melanogaster, danio rerio, homo sapiens, mus musculus and rattus
norvegicus, and user only need to update interested organism-specific
environment variables.
|
RPM found in directory: /packages/linux-pbone/ftp5.gwdg.de/pub/opensuse/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Leap_15.3/x86_64 |
