| Name : R-TmCalculator
| |
| Version : 1.0.3
| Vendor : obs://build_opensuse_org/devel:languages:R
|
| Release : lp153.1.11
| Date : 2024-06-14 11:04:18
|
| Group : Development/Libraries/Other
| Source RPM : R-TmCalculator-1.0.3-lp153.1.11.src.rpm
|
| Size : 0.08 MB
| |
| Packager : (none)
| |
| Summary : Melting Temperature of Nucleic Acid Sequences
|
Description :
This tool is extended from methods in Bio.SeqUtils.MeltingTemp of
python. The melting temperature of nucleic acid sequences can be
calculated in three method, the Wallace rule (Thein & Wallace (1986)
< doi:10.1016/S0140-6736(86)90739-7>), empirical formulas based on G and
C content (Marmur J. (1962) < doi:10.1016/S0022-2836(62)80066-7>,
Schildkraut C. (2010) < doi:10.1002/bip.360030207>, Wetmur J G (1991)
< doi:10.3109/10409239109114069>, Untergasser,A. (2012)
< doi:10.1093/nar/gks596>, von Ahsen N (2001)
< doi:10.1093/clinchem/47.11.1956>) and nearest neighbor thermodynamics
(Breslauer K J (1986) < doi:10.1073/pnas.83.11.3746>, Sugimoto N (1996)
< doi:10.1093/nar/24.22.4501>, Allawi H (1998)
< doi:10.1093/nar/26.11.2694>, SantaLucia J (2004)
< doi:10.1146/annurev.biophys.32.110601.141800>, Freier S (1986)
< doi:10.1073/pnas.83.24.9373>, Xia T (1998) < doi:10.1021/bi9809425>,
Chen JL (2012) < doi:10.1021/bi3002709>, Bommarito S (2000)
< doi:10.1093/nar/28.9.1929>, Turner D H (2010)
< doi:10.1093/nar/gkp892>, Sugimoto N (1995)
< doi:10.1016/S0048-9697(98)00088-6>, Allawi H T (1997)
< doi:10.1021/bi962590c>, Santalucia N (2005) < doi:10.1093/nar/gki918>),
and it can also be corrected with salt ions and chemical compound
(SantaLucia J (1996) < doi:10.1021/bi951907q>, SantaLucia J(1998)
< doi:10.1073/pnas.95.4.1460>, Owczarzy R (2004)
< doi:10.1021/bi034621r>, Owczarzy R (2008) < doi:10.1021/bi702363u>).
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RPM found in directory: /packages/linux-pbone/ftp5.gwdg.de/pub/opensuse/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Leap_15.3/x86_64 |
