| Name : R-aSPU
| |
| Version : 1.50
| Vendor : obs://build_opensuse_org/devel:languages:R
|
| Release : lp153.9.5
| Date : 2024-06-14 11:16:30
|
| Group : Development/Libraries/Other
| Source RPM : R-aSPU-1.50-lp153.9.5.src.rpm
|
| Size : 0.82 MB
| |
| Packager : (none)
| |
| Summary : Adaptive Sum of Powered Score Test
|
Description :
R codes for the (adaptive) Sum of Powered Score (\'SPU\' and \'aSPU\')
tests, inverse variance weighted Sum of Powered score (\'SPUw\' and
\'aSPUw\') tests and gene-based and some pathway based association tests
(Pathway based Sum of Powered Score tests (\'SPUpath\'), adaptive
\'SPUpath\' (\'aSPUpath\') test, \'GEEaSPU\' test for multiple traits -
single \'SNP\' (single nucleotide polymorphism) association in
generalized estimation equations, \'MTaSPUs\' test for multiple traits -
single \'SNP\' association with Genome Wide Association Studies (\'GWAS\')
summary statistics, Gene-based Association Test that uses an extended
\'Simes\' procedure (\'GATES\'), Hybrid Set-based Test (\'HYST\') and
extended version of \'GATES\' test for pathway-based association testing
(\'GATES-Simes\'). ). The tests can be used with genetic and other data
sets with covariates. The response variable is binary or quantitative.
Summary; (1) Single trait-\'SNP\' set association with individual-level
data (\'aSPU\', \'aSPUw\', \'aSPUr\'), (2) Single trait-\'SNP\' set association
with summary statistics (\'aSPUs\'), (3) Single trait-pathway association
with individual-level data (\'aSPUpath\'), (4) Single trait-pathway
association with summary statistics (\'aSPUsPath\'), (5) Multiple
traits-single \'SNP\' association with individual-level data (\'GEEaSPU\'),
(6) Multiple traits- single \'SNP\' association with summary statistics
(\'MTaSPUs\'), (7) Multiple traits-\'SNP\' set association with summary
statistics(\'MTaSPUsSet\'), (8) Multiple traits-pathway association with
summary statistics(\'MTaSPUsSetPath\').
|
RPM found in directory: /packages/linux-pbone/ftp5.gwdg.de/pub/opensuse/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Leap_15.3/x86_64 |
