| Name : R-alleHap
| |
| Version : 0.9.9
| Vendor : obs://build_opensuse_org/devel:languages:R
|
| Release : lp153.2.13
| Date : 2024-06-14 11:18:21
|
| Group : Development/Libraries/Other
| Source RPM : R-alleHap-0.9.9-lp153.2.13.src.rpm
|
| Size : 0.61 MB
| |
| Packager : (none)
| |
| Summary : Allele Imputation and Haplotype Reconstruction from Pedigree Databases
|
Description :
Tools to simulate alphanumeric alleles, impute genetic missing data and
reconstruct non-recombinant haplotypes from pedigree databases in a
deterministic way. Allelic simulations can be implemented taking into
account many factors (such as number of families, markers, alleles per
marker, probability and proportion of missing genotypes, recombination
rate, etc). Genotype imputation can be used with simulated datasets or
real databases (previously loaded in .ped format). Haplotype
reconstruction can be carried out even with missing data, since the
program firstly imputes each family genotype (without a reference
panel), to later reconstruct the corresponding haplotypes for each
family member. All this considering that each individual (due to
meiosis) should unequivocally have two alleles per marker (one
inherited from each parent) and thus imputation and reconstruction
results can be deterministically calculated.
|
RPM found in directory: /packages/linux-pbone/ftp5.gwdg.de/pub/opensuse/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Leap_15.3/x86_64 |
