| Name : R-chipPCR
| |
| Version : 1.0.2
| Vendor : obs://build_opensuse_org/devel:languages:R
|
| Release : lp153.14.2
| Date : 2024-06-14 11:20:59
|
| Group : Development/Libraries/Other
| Source RPM : R-chipPCR-1.0.2-lp153.14.2.src.rpm
|
| Size : 2.98 MB
| |
| Packager : (none)
| |
| Summary : Toolkit of Helper Functions to Pre-Process Amplification Data
|
Description :
A collection of functions to pre-process amplification curve data from
polymerase chain reaction (PCR) or isothermal amplification reactions.
Contains functions to normalize and baseline amplification curves, to
detect both the start and end of an amplification reaction, several
smoothers (e.g., LOWESS, moving average, cubic splines,
Savitzky-Golay), a function to detect false positive amplification
reactions and a function to determine the amplification efficiency.
Quantification point (Cq) methods include the first (FDM) and second
approximate derivative maximum (SDM) methods (calculated by a
5-point-stencil) and the cycle threshold method. Data sets of
experimental nucleic acid amplification systems (\'VideoScan HCU\',
capillary convective PCR (ccPCR)) and commercial systems are included.
Amplification curves were generated by helicase dependent amplification
(HDA), ccPCR or PCR. As detection system intercalating dyes (EvaGreen,
SYBR Green) and hydrolysis probes (TaqMan) were used. For more
information see: Roediger et al. (2015)
< doi:10.1093/bioinformatics/btv205>.
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RPM found in directory: /packages/linux-pbone/ftp5.gwdg.de/pub/opensuse/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Leap_15.3/x86_64 |
