| Name : R-coil
| |
| Version : 1.2.4
| Vendor : obs://build_opensuse_org/devel:languages:R
|
| Release : lp153.1.4
| Date : 2024-06-14 11:52:28
|
| Group : Development/Libraries/Other
| Source RPM : R-coil-1.2.4-lp153.1.4.src.rpm
|
| Size : 0.24 MB
| |
| Packager : (none)
| |
| Summary : Contextualization and Evaluation of COI-5P Barcode Data
|
Description :
Designed for the cleaning, contextualization and assessment of
cytochrome c oxidase I DNA barcode data (COI-5P, or the five prime
portion of COI). It contains functions for placing COI-5P barcode
sequences into a common reading frame, translating DNA sequences to
amino acids and for assessing the likelihood that a given barcode
sequence includes an insertion or deletion error. The error assessment
relies on the comparison of input sequences against nucleotide and
amino acid profile hidden Markov models (PHMMs) (for details see Durbin
et al. 1998, ISBN: 9780521629713) trained on a taxonomically diverse
set of reference sequences. The functions are provided as a complete
pipeline and are also available individually for efficient and targeted
analysis of barcode data.
|
RPM found in directory: /packages/linux-pbone/ftp5.gwdg.de/pub/opensuse/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Leap_15.3/x86_64 |
