| Name : R-colocalized
| |
| Version : 0.2.0
| Vendor : obs://build_opensuse_org/devel:languages:R
|
| Release : lp153.4.7
| Date : 2024-06-14 11:42:39
|
| Group : Development/Libraries/Other
| Source RPM : R-colocalized-0.2.0-lp153.4.7.src.rpm
|
| Size : 1.78 MB
| |
| Packager : (none)
| |
| Summary : Clusters of Colocalized Sequences
|
Description :
Also abbreviates to \"CCSeq\". Finds clusters of colocalized sequences in
.bed annotation files up to a specified cut-off distance. Two sequences
are colocalized if they are within the cut-off distance of each other,
and clusters are sets of sequences where each sequence is colocalized
to at least one other sequence in the cluster. For a set of .bed
annotation tables provided in a list along with a cut-off distance, the
program will output a file containing the locations of each cluster.
Annotated .bed files are from the \'pwmscan\' application at
< https://ccg.epfl.ch/pwmtools/pwmscan.php>. Personal machines might
crash or take excessively long depending on the number of annotated
sequences in each file and whether chromsearch() or gensearch() is
used.
|
RPM found in directory: /packages/linux-pbone/ftp5.gwdg.de/pub/opensuse/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Leap_15.3/x86_64 |
