| Name : R-diffEnrich
| |
| Version : 0.1.2
| Vendor : obs://build_opensuse_org/devel:languages:R
|
| Release : lp153.8.2
| Date : 2024-06-14 11:58:55
|
| Group : Development/Libraries/Other
| Source RPM : R-diffEnrich-0.1.2-lp153.8.2.src.rpm
|
| Size : 1.28 MB
| |
| Packager : (none)
| |
| Summary : Given a List of Gene Symbols, Performs Differential Enrichment Analysis
|
Description :
Compare functional enrichment between two experimentally-derived groups
of genes or proteins (Peterson, DR., et al.(2018)) < doi:
10.1371/journal.pone.0198139>. Given a list of gene symbols,
\'diffEnrich\' will perform differential enrichment analysis using the
Kyoto Encyclopedia of Genes and Genomes (KEGG) REST API. This package
provides a number of functions that are intended to be used in a
pipeline. Briefly, the user provides a KEGG formatted species id for
either human, mouse or rat, and the package will download and clean
species specific ENTREZ gene IDs and map them to their respective KEGG
pathways by accessing KEGG\'s REST API. KEGG\'s API is used to guarantee
the most up-to-date pathway data from KEGG. Next, the user will
identify significantly enriched pathways from two gene sets, and
finally, the user will identify pathways that are differentially
enriched between the two gene sets. In addition to the analysis
pipeline, this package also provides a plotting function.
|
RPM found in directory: /packages/linux-pbone/ftp5.gwdg.de/pub/opensuse/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Leap_15.3/x86_64 |
