| Name : R-genotypeR
| |
| Version : 0.0.1.8
| Vendor : obs://build_opensuse_org/devel:languages:R
|
| Release : lp153.14.11
| Date : 2024-06-14 12:14:41
|
| Group : Development/Libraries/Other
| Source RPM : R-genotypeR-0.0.1.8-lp153.14.11.src.rpm
|
| Size : 1.66 MB
| |
| Packager : (none)
| |
| Summary : SNP Genotype Marker Design and Analysis
|
Description :
We implement a common genotyping workflow with a standardized software
interface. \'genotypeR\' designs genotyping markers from vcf files,
outputs markers for multiplexing suitability on various platforms
(Sequenom and Illumina GoldenGate), and provides various QA/QC and
analysis functions. We developed this package to analyze data in
Stevison LS, SA Sefick, CA Rushton, and RM Graze. 2017. Invited Review:
Recombination rate plasticity: revealing mechanisms by design.
Philosophical Transactions Royal Society London B Biol Sci 372:1-14.
< DOI:10.1098/rstb.2016.0459>, and have published it here Sefick, S.A.,
M.A. Castronova, and L.S. Stevison. 2017. GENOTYPER: An integrated R
packages for single nuleotide polymorphism genotype marker design and
data analysis. Methods in Ecology and Evolution 9: 1318-1323. < DOI:
10.1111/2041-210X.12965>.
|
RPM found in directory: /packages/linux-pbone/ftp5.gwdg.de/pub/opensuse/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Leap_15.3/x86_64 |
