| Name : R-gtWAS
| |
| Version : 1.1.0
| Vendor : obs://build_opensuse_org/devel:languages:R
|
| Release : lp153.2.13
| Date : 2024-06-14 11:09:57
|
| Group : Development/Libraries/Other
| Source RPM : R-gtWAS-1.1.0-lp153.2.13.src.rpm
|
| Size : 0.12 MB
| |
| Packager : (none)
| |
| Summary : Genome and Transcriptome Wide Association Study
|
Description :
Quantitative trait loci mapping and genome wide association analysis
are used to find candidate molecular marker or region associated with
phenotype based on linkage analysis and linkage disequilibrium. Gene
expression quantitative trait loci mapping is used to find candidate
molecular marker or region associated with gene expression. In this
package, we applied the method in Liu W. (2011)
< doi:10.1007/s00122-011-1631-7> and Gusev A. (2016)
< doi:10.1038/ng.3506> to genome and transcriptome wide association
study, which is aimed at revealing the association relationship between
phenotype and molecular markers, expression levels, molecular markers
nested within different related expression effect and expression effect
nested within different related molecular marker effect. F test based
on full and reduced model are performed to obtain p value or likelihood
ratio statistic. The best linear model can be obtained by stepwise
regression analysis.
|
RPM found in directory: /packages/linux-pbone/ftp5.gwdg.de/pub/opensuse/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Leap_15.3/x86_64 |
